GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001434-TA|BGIBMGA001434-PA|undefined
         (110 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0668 - 26584865-26585058,26587411-26587846,26587962-265880...    28   1.9  
03_05_0401 - 23819230-23819829,23822612-23823194,23823303-23824027     26   5.8  
02_04_0536 + 23730396-23731736                                         26   5.8  
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976...    26   7.6  

>03_05_0668 -
           26584865-26585058,26587411-26587846,26587962-26588016,
           26588299-26588642
          Length = 342

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 82  HHHDVAILVTRRDICSQHDSPCSLLLRN 109
           H +D++ L+  ++IC+Q+D P +L   N
Sbjct: 140 HDNDLSFLLRCQEICTQNDGPWTLQYHN 167


>03_05_0401 - 23819230-23819829,23822612-23823194,23823303-23824027
          Length = 635

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 82  HHHDVAILVTRRDICSQHDSPCSLLLRN 109
           H +D++ L+  ++IC Q+D P +L   N
Sbjct: 305 HDNDLSFLLRCQEICIQNDGPWTLHYHN 332


>02_04_0536 + 23730396-23731736
          Length = 446

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 69  WQEQLNPDNDTNPHHHDVAILVTRRDICSQHDSPCSLLLRNL 110
           W EQ N DND     +  A   +R  +C+ +D      LR++
Sbjct: 187 WSEQYNGDNDAPAPDNSTA---SRPQLCAPYDDDIDANLRDM 225


>06_03_0912 +
           25896152-25896451,25896528-25897296,25897492-25897658,
           25898932-25901013,25901155-25901730,25904503-25905648,
           25907056-25908693
          Length = 2225

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 58  NADSTLASFCRWQEQLNPDNDTNPHH--HDVAILVTRRDICSQHDSPCS 104
           N ++  A   R+ E   P N    H   HD+A ++   ++C  H S CS
Sbjct: 406 NVNAATAMSARYTE---PQNVLKMHDIVHDLASVIAADEVCIFHASDCS 451


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.132    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,478
Number of Sequences: 37544
Number of extensions: 63963
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 4
length of query: 110
length of database: 14,793,348
effective HSP length: 72
effective length of query: 38
effective length of database: 12,090,180
effective search space: 459426840
effective search space used: 459426840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)