GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001434-TA|BGIBMGA001434-PA|undefined
         (110 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    68   1e-12
Z69360-9|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical pr...    68   1e-12
U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical pr...    40   3e-04
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr...    37   0.003
Z50004-3|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr...    37   0.003
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.      37   0.003

>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 1   MSEFHDQDSLEIYLLTIMNMVSSLYMDPSIGNYXXXXXXXXXXXXXXXXXXXXXXSTNAD 60
           M E+H + SLE Y+LT+ + V+S+Y   S+                         + NA 
Sbjct: 292 MYEYHGR-SLEDYVLTLFSTVASIYRHQSLR--ASINVVVVKLIVLKTENAGPRITQNAQ 348

Query: 61  STLASFCRWQEQLNPDNDTNPHHHDVAILVTRRDIC 96
            TL  FCRWQ+  N  +D++  HHDVAIL+TR+DIC
Sbjct: 349 QTLQDFCRWQQYYNDPDDSSVQHHDVAILLTRKDIC 384


>Z69360-9|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 1   MSEFHDQDSLEIYLLTIMNMVSSLYMDPSIGNYXXXXXXXXXXXXXXXXXXXXXXSTNAD 60
           M E+H + SLE Y+LT+ + V+S+Y   S+                         + NA 
Sbjct: 292 MYEYHGR-SLEDYVLTLFSTVASIYRHQSLR--ASINVVVVKLIVLKTENAGPRITQNAQ 348

Query: 61  STLASFCRWQEQLNPDNDTNPHHHDVAILVTRRDIC 96
            TL  FCRWQ+  N  +D++  HHDVAIL+TR+DIC
Sbjct: 349 QTLQDFCRWQQYYNDPDDSSVQHHDVAILLTRKDIC 384


>U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical
           protein T19D2.1 protein.
          Length = 872

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 58  NADSTLASFCRWQEQLNPDNDTNPHHHDVAILVTRRDI 95
           + D  L +FC++Q ++NP ND +P H D A+L +  D+
Sbjct: 211 DVDRLLDAFCQYQNEINPPNDADPRHWDHALLFSGYDL 248


>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
           protein C02B4.1 protein.
          Length = 1461

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 59  ADSTLASFCRWQEQLNPDND-TNPHHHDVAILVTRRDI 95
           A S L +FCR+Q  +NP  D T+ +H+D  +L+T  DI
Sbjct: 312 AQSLLDAFCRYQAHMNPGTDLTDMNHYDHGVLLTGYDI 349


>Z50004-3|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
           protein C02B4.1 protein.
          Length = 1461

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 59  ADSTLASFCRWQEQLNPDND-TNPHHHDVAILVTRRDI 95
           A S L +FCR+Q  +NP  D T+ +H+D  +L+T  DI
Sbjct: 312 AQSLLDAFCRYQAHMNPGTDLTDMNHYDHGVLLTGYDI 349


>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
          Length = 1461

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 59  ADSTLASFCRWQEQLNPDND-TNPHHHDVAILVTRRDI 95
           A S L +FCR+Q  +NP  D T+ +H+D  +L+T  DI
Sbjct: 312 AQSLLDAFCRYQAHMNPGTDLTDMNHYDHGVLLTGYDI 349


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.132    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,264
Number of Sequences: 27539
Number of extensions: 58167
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 6
length of query: 110
length of database: 12,573,161
effective HSP length: 72
effective length of query: 38
effective length of database: 10,590,353
effective search space: 402433414
effective search space used: 402433414
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)