GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001434-TA|BGIBMGA001434-PA|undefined
         (110 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40820.1 68418.m04956 FAT domain-containing protein / phospha...    25   8.6  
At1g72510.2 68414.m08385 expressed protein                             25   8.6  
At1g72510.1 68414.m08384 expressed protein                             25   8.6  

>At5g40820.1 68418.m04956 FAT domain-containing protein /
          phosphatidylinositol 3- and 4-kinase family protein
          similar to Atr protein [Xenopus laevis] GI:11385422;
          contains Pfam profiles PF00454 Phosphatidylinositol 3-
          and 4-kinase, PF02259 FAT domain, PF02260 FAT C domain
          Length = 2702

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 6  DQDSLEIYLLTIMNMVSSLYMDPSIGN 32
          D+D+LEI    ++  + + Y+ PS+GN
Sbjct: 36 DEDALEIRFRAVIPNLLNTYVVPSLGN 62


>At1g72510.2 68414.m08385 expressed protein 
          Length = 165

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 74  NPDNDTNPHHHD-VAILVTRRDIC 96
           +P  D   HHHD V+ +++R D C
Sbjct: 137 SPSKDDQDHHHDCVSNVLSRSDSC 160


>At1g72510.1 68414.m08384 expressed protein 
          Length = 165

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 74  NPDNDTNPHHHD-VAILVTRRDIC 96
           +P  D   HHHD V+ +++R D C
Sbjct: 137 SPSKDDQDHHHDCVSNVLSRSDSC 160


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.132    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,124,145
Number of Sequences: 28952
Number of extensions: 54156
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 3
length of query: 110
length of database: 12,070,560
effective HSP length: 71
effective length of query: 39
effective length of database: 10,014,968
effective search space: 390583752
effective search space used: 390583752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)