Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001433-TA|BGIBMGA001433-PA|undefined
         (73 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   2.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   4.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   8.2  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 2.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 33  AKHVWTDDMTRVELGSDDVNR 53
           AKH+W  D+  +     ++NR
Sbjct: 209 AKHMWPSDLRTIYSRVRNLNR 229


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.4 bits (38), Expect = 4.7
 Identities = 9/35 (25%), Positives = 19/35 (54%)

Query: 9   LNKMEVRCSLFKLLLFQMLVAWCDAKHVWTDDMTR 43
           + K ++ C+L  + L ++ +   D KH+ T   T+
Sbjct: 197 IEKYKMFCNLENVKLKELRIILEDIKHINTRHNTK 231


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 47  GSDDVNREVQDSIDTFMHTV 66
           GS ++N+ +  +ID   +T+
Sbjct: 409 GSMEINQNIAQNIDHAKNTI 428


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.132    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,167
Number of Sequences: 429
Number of extensions: 390
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 73
length of database: 140,377
effective HSP length: 46
effective length of query: 27
effective length of database: 120,643
effective search space:  3257361
effective search space used:  3257361
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.8 bits)
S2: 36 (18.6 bits)