Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001433-TA|BGIBMGA001433-PA|undefined
         (73 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61240.1 68418.m07681 leucine-rich repeat family protein cont...    25   4.6  
At5g09630.1 68418.m01114 expressed protein                             25   4.6  
At2g21550.1 68415.m02565 bifunctional dihydrofolate reductase-th...    25   4.6  
At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR ...    25   4.6  
At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR...    25   6.1  
At5g58610.1 68418.m07345 PHD finger transcription factor, putative     25   8.1  

>At5g61240.1 68418.m07681 leucine-rich repeat family protein
          contains leucine rich-repeat (LRR) domains
          Pfam:PF00560, INTERPRO:IPR001611; contains similarity
          to Hcr2-0B [Lycopersicon esculentum]
          gi|3894387|gb|AAC78593
          Length = 380

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 12 MEVRCSLFKLLLFQMLVAWCDAKHVWTDDMTRVEL 46
          M  RC L  + +F +L+A+  +K +  D   +V L
Sbjct: 1  MASRCELLLICVFSLLIAFAHSKTLKRDAFLKVNL 35


>At5g09630.1 68418.m01114 expressed protein
          Length = 386

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 6/39 (15%)

Query: 39 DDMTRVELGSDD------VNREVQDSIDTFMHTVELQPS 71
          D +TR++LG+DD      V  E++  +D  +  ++LQ S
Sbjct: 40 DTLTRIQLGNDDGVEPESVLTELRRKLDALLPIIQLQKS 78


>At2g21550.1 68415.m02565 bifunctional dihydrofolate
           reductase-thymidylate synthase, putative / DHFR-TS,
           putative similar to THY-1 [SP| Q05762] and THY-2
           [SP|Q05763] from Arabidopsis thaliana; contains Pfam
           profiles PF00303 thymidylate synthase and PF00186
           dihydrofolate reductase
          Length = 492

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 32  DAKHVWTDDMTRVELGSDDVNREVQDSIDTFMH 64
           +  H+W  D  +  L S  VN   +D  + F+H
Sbjct: 302 NGSHIWDTDEAKEYLDSFGVNATEEDGDNPFLH 334


>At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 894

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 6   SRVLNKMEVRCSLFKLLLFQMLVAWCDAKHVWTDDMTRVELGS---DDVNREVQDSIDTF 62
           +R+ NK   +CS F ++++ ++    D   +  D   R++LG    D+VN E Q ++D +
Sbjct: 194 TRINNKFSEKCSGFGVVIWVVVSKSPDIHRIQGDIGKRLDLGGEEWDNVN-ENQRALDIY 252


>At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein. A false
           intron was added between exons 2 and 3 to circumvent a
           frameshift caused by a sequencing error, as per Blake
           Meyers (bcmeyers@vegmail.ucdavis.edu)
          Length = 1308

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 37  WTDDMTRVELGSDDVNREVQDSIDTFMHTVELQ 69
           W D+   +E+ +DDV++++  S + F   V ++
Sbjct: 155 WPDEAVMIEMVADDVSKKLFKSSNDFSDIVGIE 187


>At5g58610.1 68418.m07345 PHD finger transcription factor, putative
          Length = 1065

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 7/47 (14%)

Query: 24  FQMLVAW-CDAKHVWTDDMTRVELGSDDVNREVQDSIDTFMHTVELQ 69
           F  +  W C  KH+W D M    LG  + N ++  +ID F+H  + +
Sbjct: 205 FVRIQEWTCSTKHLWQDLM----LGVIEDNLKI--TIDQFLHDFDAE 245


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.132    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,504,650
Number of Sequences: 28952
Number of extensions: 46471
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 6
length of query: 73
length of database: 12,070,560
effective HSP length: 53
effective length of query: 20
effective length of database: 10,536,104
effective search space: 210722080
effective search space used: 210722080
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)