GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001433-TA|BGIBMGA001433-PA|undefined
         (73 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    22   0.76 
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    19   4.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    19   4.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    19   7.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    19   7.1  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    18   9.4  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    18   9.4  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    18   9.4  

>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.8 bits (44), Expect = 0.76
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 28  VAWCDAKHVWTDDMTRVELGSDDVNREVQDSID 60
           V+WC+    W+  +++       +  E  D ID
Sbjct: 326 VSWCELNFDWSSQVSKAGELIHQIQTEDHDIID 358


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 33  AKHVWTDDMTRVELGSDDVNRE 54
           AKH+W  D+  +     ++N +
Sbjct: 205 AKHMWPADLEAIYASLKNLNTD 226


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
          kinase Torso-likeprotein protein.
          Length = 803

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/23 (26%), Positives = 14/23 (60%)

Query: 4  SESRVLNKMEVRCSLFKLLLFQM 26
          S+  +LN +++RC    ++ F +
Sbjct: 67 SQESLLNSIQIRCIESNMISFYL 89


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/34 (17%), Positives = 19/34 (55%)

Query: 23   LFQMLVAWCDAKHVWTDDMTRVELGSDDVNREVQ 56
            LF+ ++    A +   + + +++    D+NR+++
Sbjct: 1084 LFKCMICTYKADNKENEQLRKIQESLRDLNRKIE 1117


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/34 (17%), Positives = 19/34 (55%)

Query: 23   LFQMLVAWCDAKHVWTDDMTRVELGSDDVNREVQ 56
            LF+ ++    A +   + + +++    D+NR+++
Sbjct: 1084 LFKCMICTYKADNKENEQLRKIQESLRDLNRKIE 1117


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 5/12 (41%), Positives = 8/12 (66%)

Query: 33  AKHVWTDDMTRV 44
           AKH+W  D+  +
Sbjct: 206 AKHMWPADLEAI 217


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 5/12 (41%), Positives = 8/12 (66%)

Query: 33  AKHVWTDDMTRV 44
           AKH+W  D+  +
Sbjct: 206 AKHMWPADLEAI 217


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 5/16 (31%), Positives = 11/16 (68%)

Query: 51  VNREVQDSIDTFMHTV 66
           +N ++  SID ++H +
Sbjct: 482 INYDLPKSIDEYVHRI 497


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.132    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,174
Number of Sequences: 317
Number of extensions: 401
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 73
length of database: 114,650
effective HSP length: 45
effective length of query: 28
effective length of database: 100,385
effective search space:  2810780
effective search space used:  2810780
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.3 bits)
S2: 35 (18.2 bits)