Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001433-TA|BGIBMGA001433-PA|undefined
(73 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0147 - 13125065-13126679,13126802-13127664 28 0.80
01_01_0050 - 382451-382864,382950-383020,383131-383176,383302-38... 27 2.4
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294... 26 3.2
11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657 26 4.3
08_02_1237 + 25475219-25475916,25476127-25476320,25476407-254773... 25 5.6
02_03_0344 + 17967687-17968309,17968402-17968744,17970285-179704... 25 5.6
02_03_0343 + 17961977-17962596,17962670-17963015,17965933-179662... 25 5.6
06_03_1379 - 29709532-29709843,29709951-29710112,29710193-297110... 25 9.8
03_05_0744 + 27336697-27337131,27337329-27337787,27340852-273424... 25 9.8
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446... 25 9.8
>01_03_0147 - 13125065-13126679,13126802-13127664
Length = 825
Score = 28.3 bits (60), Expect = 0.80
Identities = 21/64 (32%), Positives = 27/64 (42%)
Query: 10 NKMEVRCSLFKLLLFQMLVAWCDAKHVWTDDMTRVELGSDDVNREVQDSIDTFMHTVELQ 69
N V L L + L +CDA + D+ TRV SD R Q SI + +V
Sbjct: 688 NTGSVLPELADLANLRELELFCDASEISGDNKTRVSFSSDGFKRLKQLSIQGSLPSVAFV 747
Query: 70 PSML 73
S L
Sbjct: 748 NSSL 751
>01_01_0050 -
382451-382864,382950-383020,383131-383176,383302-383333,
383409-383558,383666-383849,383934-384109,384580-384628,
384724-384923,385515-385548
Length = 451
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 18 LFKLLLFQMLVAWCDAKHVWTDDMTRVELGS---DDVNREVQDSIDTFMHTVELQPSML 73
+ K L L +W HV D+++ EL S +++ +QDS F + +L
Sbjct: 151 ILKKLFVPRLKSWIQGAHVEGDEISGNELKSKFYEEIKAAIQDSASAFSDIAKTNQELL 209
>03_05_0843 +
28126480-28127007,28127092-28127457,28129388-28129487,
28130266-28130546,28130643-28130705,28131276-28131431,
28131913-28132080,28132158-28132298,28132714-28132840,
28132888-28132994,28134142-28134372,28134446-28134559,
28135091-28135261
Length = 850
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 40 DMTRVELGSDDVNREVQDSIDTFMHTV 66
D R E GSDD + D IDT M +V
Sbjct: 377 DFQRSEAGSDDEDDYPMDGIDTSMKSV 403
>11_06_0229 +
21512943-21513237,21513273-21513756,21514668-21516657
Length = 922
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/23 (43%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 50 DVNREVQDSIDTFM-HTVELQPS 71
D++ +++D+IDTFM H L+P+
Sbjct: 71 DISYDIEDTIDTFMLHVNGLEPT 93
>08_02_1237 +
25475219-25475916,25476127-25476320,25476407-25477302,
25477416-25477490,25477582-25477689,25477780-25477897,
25478007-25478142,25478228-25478372,25478460-25479080,
25479166-25479597
Length = 1140
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 4 SESRVLNKMEVRCSLFK-LLLFQMLVAWCDAKHVWTDDMTRVELGSDDVNREVQDSI 59
S+S L+ M + F+ LLLF WC + + + L SD++++E + +
Sbjct: 869 SDSSGLDLMYFSTARFRYLLLFSSERDWCSLTKTLLEILAKRSLASDELSQETLEML 925
>02_03_0344 +
17967687-17968309,17968402-17968744,17970285-17970410,
17970458-17970642,17970721-17970973
Length = 509
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 11 KMEVRCSLFKLLLFQMLVAWCDAKHVWTDDMTRV 44
++E++ LF+LL+ M+ CD + DD +V
Sbjct: 181 RVELKSRLFELLMNTMMAMICDKTYYGDDDDGKV 214
>02_03_0343 +
17961977-17962596,17962670-17963015,17965933-17966291,
17966384-17966636
Length = 525
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 11 KMEVRCSLFKLLLFQMLVAWCDAKHVWTDD 40
++E++ LF+LL+ M+ CD + DD
Sbjct: 180 RVELKSRLFELLMNTMMAMICDKTYYGADD 209
>06_03_1379 -
29709532-29709843,29709951-29710112,29710193-29711086,
29712741-29712812,29714106-29714210,29714820-29714900
Length = 541
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 22 LLFQMLVAWCDAKHVWTDDMTRVELGSDDVN 52
LLF +L + +HV D MTRV D +N
Sbjct: 482 LLFAILEMGDELEHVTIDPMTRVPYSPDLMN 512
>03_05_0744 +
27336697-27337131,27337329-27337787,27340852-27342418,
27342641-27343044
Length = 954
Score = 24.6 bits (51), Expect = 9.8
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 9 LNKMEVRCSLFKLLLFQMLVAWCDAKHVWTDDMTRVELGSDDVNREVQDSID 60
LNK++V CSL +LL L++ D + W + + V+L R +D +D
Sbjct: 888 LNKLDVYCSL-RLL---KLISLQDGSYEW-EKIQHVQLLKAYGKRSTEDKVD 934
>03_01_0607 +
4464669-4465367,4466212-4467369,4468005-4469114,
4469273-4469314,4469496-4469572,4469671-4469755,
4469818-4469901,4469988-4470089,4470181-4470279,
4470794-4470919
Length = 1193
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 2 RASESRVLNKMEVRCSLFKLLLFQMLVAWCDAKH 35
RAS +RV+ +M+ C+ K+L ++ A H
Sbjct: 106 RASAARVVERMQHTCAAGKVLCRSLMSVLSSANH 139
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.132 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,745
Number of Sequences: 37544
Number of extensions: 55106
Number of successful extensions: 210
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 12
length of query: 73
length of database: 14,793,348
effective HSP length: 53
effective length of query: 20
effective length of database: 12,803,516
effective search space: 256070320
effective search space used: 256070320
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)
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