GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001433-TA|BGIBMGA001433-PA|undefined
         (73 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024771-10|AAK70664.1|  433|Caenorhabditis elegans Hypothetical...    29   0.30 
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    25   6.5  

>AC024771-10|AAK70664.1|  433|Caenorhabditis elegans Hypothetical
          protein Y40B10A.9 protein.
          Length = 433

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 7/58 (12%)

Query: 17 SLFKLLLFQMLVAWCDAKHVWTDD-MTRVELGSDDVNREVQDSIDTFMHTVELQPSML 73
          S+F  L+F     WC  +H+  DD +TR+E   + +  + +D  D +M  + LQ S L
Sbjct: 8  SIFLFLVFATSATWC--QHIHNDDYLTRIE---EKLTTD-RDFYDQWMELITLQNSQL 59


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
            ZK1067.2 protein.
          Length = 2219

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 9    LNKMEVRCSLFKLLLFQMLVAWCDA-KHVWTDDMTR 43
            LN ++   SL +L  + + + WCDA + + T+++ R
Sbjct: 1146 LNDIKYIFSLARLKRWSLYITWCDALRSIVTENLPR 1181


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.132    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,581,274
Number of Sequences: 27539
Number of extensions: 48121
Number of successful extensions: 158
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 157
Number of HSP's gapped (non-prelim): 3
length of query: 73
length of database: 12,573,161
effective HSP length: 53
effective length of query: 20
effective length of database: 11,113,594
effective search space: 222271880
effective search space used: 222271880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)