Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001432-TA|BGIBMGA001432-PA|undefined
         (126 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   1.5  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   2.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   2.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   4.7  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    20   6.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   6.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   6.2  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    20   8.2  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    20   8.2  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    20   8.2  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    20   8.2  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    20   8.2  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           20   8.2  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    20   8.2  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    20   8.2  

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 12/35 (34%), Positives = 14/35 (40%)

Query: 25  APVPDSPSQPAILPVTPGQPANIPATSGDSAPGGW 59
           AP     S P+I P     P  +P   G S P  W
Sbjct: 193 APSVSPASLPSISPSGGFLPKWLPPLQGFSDPSAW 227


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 27  VPDSPSQPAILPVTPGQPANIPATSGDSAP 56
           V  S + PA  P +   P  IP  S  ++P
Sbjct: 204 VKASKASPAAAPRSVATPTGIPTPSTSASP 233


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 30  SPSQPAILPVTPGQPANIPATSGDSAPGG 58
           SP + +  P +  +     +T+GD  PGG
Sbjct: 929 SPCRNSASPASSDRSGTPRSTNGDRKPGG 957


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
          protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 10/34 (29%), Positives = 12/34 (35%)

Query: 16 GMAGQPVPTAPVPDSPSQPAILPVTPGQPANIPA 49
          GM        P   S   PA +      P +IPA
Sbjct: 26 GMTSPAAAPPPATTSSGSPASVASNASAPLHIPA 59


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)

Query: 108 NFAPYYPTYAAIQPPPL 124
           +FA   P Y    PPPL
Sbjct: 190 SFAESIPPYLFFVPPPL 206


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)

Query: 108 NFAPYYPTYAAIQPPPL 124
           +FA   P Y    PPPL
Sbjct: 423 SFAESIPPYLFFVPPPL 439


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)

Query: 108 NFAPYYPTYAAIQPPPL 124
           +FA   P Y    PPPL
Sbjct: 423 SFAESIPPYLFFVPPPL 439


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 7/17 (41%), Positives = 8/17 (47%)

Query: 107 PNFAPYYPTYAAIQPPP 123
           P  AP YP +    P P
Sbjct: 46  PQVAPQYPQHPYAAPAP 62


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 7/17 (41%), Positives = 8/17 (47%)

Query: 107 PNFAPYYPTYAAIQPPP 123
           P  AP YP +    P P
Sbjct: 46  PQVAPQYPQHPYAAPAP 62


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 7/17 (41%), Positives = 8/17 (47%)

Query: 107 PNFAPYYPTYAAIQPPP 123
           P  AP YP +    P P
Sbjct: 46  PQVAPQYPQHPYAAPAP 62


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 7/17 (41%), Positives = 8/17 (47%)

Query: 107 PNFAPYYPTYAAIQPPP 123
           P  AP YP +    P P
Sbjct: 46  PQVAPQYPQHPYAAPAP 62


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 7/17 (41%), Positives = 8/17 (47%)

Query: 107 PNFAPYYPTYAAIQPPP 123
           P  AP YP +    P P
Sbjct: 46  PQVAPQYPQHPYAAPAP 62


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 7/17 (41%), Positives = 8/17 (47%)

Query: 107 PNFAPYYPTYAAIQPPP 123
           P  AP YP +    P P
Sbjct: 46  PQVAPQYPQHPYAAPAP 62


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 7/17 (41%), Positives = 8/17 (47%)

Query: 107 PNFAPYYPTYAAIQPPP 123
           P  AP YP +    P P
Sbjct: 46  PQVAPQYPQHPYAAPAP 62


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 7/17 (41%), Positives = 8/17 (47%)

Query: 107 PNFAPYYPTYAAIQPPP 123
           P  AP YP +    P P
Sbjct: 46  PQVAPQYPQHPYAAPAP 62


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.135    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,583
Number of Sequences: 317
Number of extensions: 1667
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 126
length of database: 114,650
effective HSP length: 50
effective length of query: 76
effective length of database: 98,800
effective search space:  7508800
effective search space used:  7508800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)
S2: 39 (19.8 bits)