Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001431-TA|BGIBMGA001431-PA|IPR011021|Arrestin,
N-terminal, IPR011022|Arrestin, C-terminal
         (286 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    40   5e-04
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    37   0.003
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    36   0.005
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    28   1.8  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   5.4  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    26   7.1  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    25   9.4  

>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 11/154 (7%)

Query: 5   EANIYLDNQWNTYYAGQTVNGRIEYVFDSPKKVRGIHVKIKGEAHTELYESKQEENAQGK 64
           EAN+ +    N+      ++G +     SP +V+ I +++ G +    +  +    + G 
Sbjct: 24  EANVIV-LYGNSMDTSARLSGIVVLSVSSPIRVKNIKLRLSGRSFV-CWADESRHASPGN 81

Query: 65  TESTDTMHTGNEEYFQISYYLLGSNTGNEIEIPQGKHIYNFTCTLPPVLPSSFEGEHG-Y 123
                 +     +    S+  L  N   ++ I QG + Y F   LPP +P S EG  G +
Sbjct: 82  RIRRQVV-----QILDKSWSFLAPNESAKV-IDQGNYEYPFYYELPPDIPDSIEGIPGCH 135

Query: 124 VRYTVKVTLDRPWK--FDQETKMAFTVINALDLN 155
           + YT+  +L+R  +   + ET + F VI  +  N
Sbjct: 136 IIYTLTASLERATQPPTNLETALQFRVIRTIPPN 169


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 99  GKHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDR 134
           G++ YNF   +P   P S E + G+VRY ++ T++R
Sbjct: 273 GEYTYNFDLAIPNCFPESVEAKMGWVRYFLEATVER 308


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 12/155 (7%)

Query: 99  GKHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDRPWKFDQET--KMAFTVINALDLNL 156
           G+++YNF   +    P S + + G V Y ++  +DR   F  ++  ++   +I +   + 
Sbjct: 191 GEYVYNFELPISCTYPESIQTDMGRVYYFLETLVDRSSTFSGKSTGRIPIELIRS-PCST 249

Query: 157 NPSYKEPIHIQLEKTFCCFCCASPPLAVDVQAPVSGYCPGQVIPLKIDIENKSNVQLHLV 216
           + +  EPI +   K++         L  +VQ        GQV+P+         V+ H +
Sbjct: 250 SVATSEPILV--SKSW------EDRLHYEVQVGEKCVVMGQVVPVNFKFTLLGEVKFHKL 301

Query: 217 KIFLRKVVTYRATSPSSATKKIKDVILTLQEGPAP 251
           ++FL +   Y      S  +K K   L L E  AP
Sbjct: 302 RLFLME-RRYYYCRQRSVRRKEKTRQLLLYERSAP 335


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 215 LVKIFLRKV--VTYRATSPSSATKKIKDVILTLQEGPAPAGTT 255
           L++I LR+V  + Y    PS   K  +++ L LQ+ P    TT
Sbjct: 19  LIRIGLRQVESIVYHVAKPSHDDKIPREIFLKLQDSPLYNSTT 61


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 29/136 (21%), Positives = 59/136 (43%), Gaps = 12/136 (8%)

Query: 67  STDTMHTGNEEYFQISYYLLGSNTGNEIEIPQGKHIYNFTCTLPPVLPSSFEGEHGYVRY 126
           ST    + N  Y++ SY  +G++  +  ++P    +   +    P  PS+   ++     
Sbjct: 385 STGYPSSANNVYYENSYQGVGTSMSDNYQLPD---MSKLSLNEQPAAPSNSNSQY---MN 438

Query: 127 TVKVTLDRPWKFDQETKMAFTVINALDLNLNPSYKEPIHIQLEKTFCCFCCASPPLAVDV 186
           T   TLD    + Q  +  +++ N +    N S  +P  +Q++ T      A P   + +
Sbjct: 439 TSMPTLDSTNMYGQSNQDPYSMSNGV-YGSNYS-AQPSTMQMQAT----GIAPPQPNMSM 492

Query: 187 QAPVSGYCPGQVIPLK 202
           Q P+S    G  +P++
Sbjct: 493 QMPMSMQSTGYQMPME 508


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 228 ATSPSSATKKIKDVILTLQEGPAPAGTTKHWNLNIEIPPIPPSNL 272
           +TS S ++  +   +    +   P+      N NI  PP+PPSN+
Sbjct: 214 STSTSGSSSNVAAEVSN--DASQPSNQDSSLNSNIVKPPLPPSNV 256


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 202 KIDIENKSNVQLHLVKIFLRK 222
           ++D+ENK NV+    +IF RK
Sbjct: 508 EVDVENKQNVRTKYDRIFERK 528


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,432
Number of Sequences: 5004
Number of extensions: 65036
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 7
length of query: 286
length of database: 2,362,478
effective HSP length: 72
effective length of query: 214
effective length of database: 2,002,190
effective search space: 428468660
effective search space used: 428468660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)