GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001431-TA|BGIBMGA001431-PA|IPR011021|Arrestin,
N-terminal, IPR011022|Arrestin, C-terminal
         (286 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    30   0.020
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    24   1.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.1  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   4.1  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   4.1  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   4.1  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   4.1  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   5.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.5  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 30.3 bits (65), Expect = 0.020
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 47  EAHTE--LYESKQEENAQGKTESTDTMHTGNEEYFQISYYLLGSNTGNEIEI-PQGKHIY 103
           +AH +  +Y+ +Q+  A  + +S   MH   ++  Q    ++ S    + +  PQG    
Sbjct: 196 QAHEQHMMYQQQQQSQAASQ-QSQPGMHPRQQQQAQQHQGVVTSPLSQQQQAAPQGAASA 254

Query: 104 NFTCTLPPVLPSSFEGEHGYVRYTVKVTLDRPWKF 138
           N    L P + S FE + G   YT   TL+   +F
Sbjct: 255 NLPSPLYPWMRSQFERKRGRQTYTRYQTLELEKEF 289


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 6/17 (35%), Positives = 15/17 (88%)

Query: 195 PGQVIPLKIDIENKSNV 211
           PG+++PL+ D+ N++++
Sbjct: 55  PGKLVPLQCDLSNQNDI 71


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
          protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 64 KTESTDTMHTGNEE 77
          KTE+ D++H GN E
Sbjct: 23 KTEAFDSLHAGNAE 36


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 67  STDTMHTGNEEYFQISYYLLGSNTGNEIEIPQGKHIYNFTCTLPP 111
           S  T+H  N  Y ++ YY +  N   +I +P    +  +    PP
Sbjct: 86  SNKTIHNNNNNYKKLQYYNI--NYIEQIPVPVPVPVPVYYGNFPP 128


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 67  STDTMHTGNEEYFQISYYLLGSNTGNEIEIPQGKHIYNFTCTLPP 111
           S  T+H  N  Y ++ YY +  N   +I +P    +  +    PP
Sbjct: 86  SNKTIHNNNNNYKKLQYYNI--NYIEQIPVPVPVPVPVYYGNFPP 128


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 67  STDTMHTGNEEYFQISYYLLGSNTGNEIEIPQGKHIYNFTCTLPP 111
           S  T+H  N  Y ++ YY +  N   +I +P    +  +    PP
Sbjct: 86  SNKTIHNNNNNYKKLQYYNI--NYIEQIPVPVPVPVPVYYGNFPP 128


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 67  STDTMHTGNEEYFQISYYLLGSNTGNEIEIPQGKHIYNFTCTLPP 111
           S  T+H  N  Y ++ YY +  N   +I +P    +  +    PP
Sbjct: 319 SNKTIHNNNNNYKKLQYYNI--NYIEQIPVPVPVPVPVYYGNFPP 361


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 67  STDTMHTGNEEYFQISYYLLGSNTGNEIEIP 97
           S  T+H  N  Y ++ YY +  N   +I +P
Sbjct: 86  SNKTIHNNNNNYKKLQYYNI--NYIEQIPVP 114


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis
          mellifera ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 74 GNEEYFQISYYLLGSN 89
          G  EYF +S +L G+N
Sbjct: 46 GGLEYFLLSAFLFGAN 61


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,708
Number of Sequences: 429
Number of extensions: 4425
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 9
length of query: 286
length of database: 140,377
effective HSP length: 57
effective length of query: 229
effective length of database: 115,924
effective search space: 26546596
effective search space used: 26546596
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)