GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001431-TA|BGIBMGA001431-PA|IPR011021|Arrestin,
N-terminal, IPR011022|Arrestin, C-terminal
         (286 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta...    30   1.6  
At5g16190.1 68418.m01892 glycosyl transferase family 2 protein s...    30   2.0  
At1g77390.1 68414.m09012 cyclin, putative similar to mitotic cyc...    30   2.0  
At1g70830.2 68414.m08171 Bet v I allergen family protein similar...    28   6.3  
At1g70830.1 68414.m08170 Bet v I allergen family protein similar...    28   6.3  
At1g09090.2 68414.m01015 respiratory burst oxidase protein B (Rb...    28   6.3  
At1g09090.1 68414.m01014 respiratory burst oxidase protein B (Rb...    28   6.3  
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains...    28   8.3  

>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam domains PF00226:
           DnaJ domain and PF00096: Zinc finger, C2H2 type
          Length = 630

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/65 (26%), Positives = 30/65 (46%)

Query: 16  TYYAGQTVNGRIEYVFDSPKKVRGIHVKIKGEAHTELYESKQEENAQGKTESTDTMHTGN 75
           T Y  +     I+   DSP+ V  +H K++ E + +  E   ++   G+ + TD  +   
Sbjct: 344 TDYEEENEEEEIDGPLDSPESVEELHEKLQEELNIDNEERDVKKEVVGEADETDDEYFVA 403

Query: 76  EEYFQ 80
           EE  Q
Sbjct: 404 EEDMQ 408


>At5g16190.1 68418.m01892 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535
          Length = 504

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 9/69 (13%)

Query: 96  IPQG-KHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDRP--------WKFDQETKMAF 146
           + QG +H Y  TCT   +  + F+ E  Y+  TV   +  P        WKF    K   
Sbjct: 153 LKQGMRHSYVKTCTYIAIFDADFQPEPDYLERTVPFLIHNPELALVQARWKFVNAKKCLM 212

Query: 147 TVINALDLN 155
           T +  + LN
Sbjct: 213 TRMQEMSLN 221


>At1g77390.1 68414.m09012 cyclin, putative similar to mitotic cyclin
           a2-type [Glycine max] GI:857397; contains Pfam profiles
           PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
           C-terminal domain
          Length = 442

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 227 RATSPSSATKKIKDVILTLQEGPAPAGTTKHWNLNIEIPPIPPSNLVNCNII 278
           R  SPSS      + I   ++ P PA  +++WNL I    +PP      NII
Sbjct: 47  RNPSPSSTLVNCSNKIGQSKKAPKPA-LSRNWNLGILDSGLPPKPNAKSNII 97


>At1g70830.2 68414.m08171 Bet v I allergen family protein similar to
           Csf-2 [Cucumis sativus][GI:5762258][J Am Soc Hortic Sci
           124, 136-139 (1999)] ; contains Pfam profile PF00407:
           Pathogenesis-related protein Bet v I family
          Length = 335

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 221 RKVVTYRATSPSSATKKIKDVILTLQEGPAPA--GTTKHWNLNIE 263
           + ++T+R        K+ K  +LT+Q  P P   G+  HW+L  E
Sbjct: 99  KNLITFRVIE-GDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYE 142


>At1g70830.1 68414.m08170 Bet v I allergen family protein similar to
           Csf-2 [Cucumis sativus][GI:5762258][J Am Soc Hortic Sci
           124, 136-139 (1999)] ; contains Pfam profile PF00407:
           Pathogenesis-related protein Bet v I family
          Length = 335

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 221 RKVVTYRATSPSSATKKIKDVILTLQEGPAPA--GTTKHWNLNIE 263
           + ++T+R        K+ K  +LT+Q  P P   G+  HW+L  E
Sbjct: 99  KNLITFRVIE-GDLMKEYKSFLLTIQVTPKPGGPGSIVHWHLEYE 142


>At1g09090.2 68414.m01015 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 843

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 202 KIDIENKSNVQLHLVKIFLRKVVTYRATSPSSATKKIKDVILTLQEGPA-PAGTTKHWNL 260
           ++D +N   ++LH ++  L +V +    SPSSA K+  + +L+ +  P       K + +
Sbjct: 226 ELDRDNLGYIELHNLETLLLQVPSQSNNSPSSANKRALNKMLSQKLIPTKDRNPVKRFAM 285

Query: 261 NI 262
           NI
Sbjct: 286 NI 287


>At1g09090.1 68414.m01014 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 622

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 202 KIDIENKSNVQLHLVKIFLRKVVTYRATSPSSATKKIKDVILTLQEGPA-PAGTTKHWNL 260
           ++D +N   ++LH ++  L +V +    SPSSA K+  + +L+ +  P       K + +
Sbjct: 226 ELDRDNLGYIELHNLETLLLQVPSQSNNSPSSANKRALNKMLSQKLIPTKDRNPVKRFAM 285

Query: 261 NI 262
           NI
Sbjct: 286 NI 287


>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
           PROSITE domains, PS00674: AAA-protein family signature
           and PS00017: ATP/GTP-binding site motif A (P-loop)
          Length = 1954

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 40  IHVKIKGEAHTELYESKQEENAQGKTESTDTMHTGNEEYFQISYYLLGSNTGNEIEIPQG 99
           +H ++ GEA TE+ ES ++ +  G+   + T    N +  + + +L     G  +E+P  
Sbjct: 403 LHPELLGEASTEINESLKQNDDIGEQGVSRT--PSNNKTKEHNEFL--DRGGESVEMPDE 458

Query: 100 KHIYNFTC 107
             I N TC
Sbjct: 459 LPIQNETC 466


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,471,258
Number of Sequences: 28952
Number of extensions: 336497
Number of successful extensions: 743
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 738
Number of HSP's gapped (non-prelim): 10
length of query: 286
length of database: 12,070,560
effective HSP length: 80
effective length of query: 206
effective length of database: 9,754,400
effective search space: 2009406400
effective search space used: 2009406400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)