Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001430-TA|BGIBMGA001430-PA|undefined
         (840 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    29   0.13 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        27   0.40 
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   8.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 29.1 bits (62), Expect = 0.13
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 654 LMLKQERPTADVVRQLFCRTYDEEDTSVVSTLMYWCQDYEDKVGDLV 700
           L+LK+  P AD+   L+ R    +DT  + +L  W     DK   LV
Sbjct: 681 LLLKEFDPWADLDNNLYERVTSLKDTKAILSLGGWTDSAGDKYSRLV 727


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 0.40
 Identities = 14/51 (27%), Positives = 21/51 (41%)

Query: 234 RSHPAVTATLLDFLCRIIPNFYPPYAEKVRQGIFNSLQQIIEKRVLPNLHP 284
           R    +T+     +    P  YPP A+ V    FNS+       V+  L+P
Sbjct: 274 RLRKQITSAATPLVRSYAPERYPPLAQGVNDDAFNSVATPTPTSVMTELYP 324


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 15  LICMVVYTYLRLVEDHNIPQLMNLRQKEVNFVITLIRERFTDVLSLGRDLVRLLQNVARI 74
           LI   + T + LV  H +  L  +R   + F    +  R  DV+          Q + R+
Sbjct: 160 LITRKLATLMALVTAHRVQTLAAIRINNILFSAEGVEIRIPDVIKTSGP--HKFQPLLRL 217

Query: 75  PEFNQ 79
           P+F +
Sbjct: 218 PKFKK 222


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,047
Number of Sequences: 317
Number of extensions: 7992
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 3
length of query: 840
length of database: 114,650
effective HSP length: 63
effective length of query: 777
effective length of database: 94,679
effective search space: 73565583
effective search space used: 73565583
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)