Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001430-TA|BGIBMGA001430-PA|undefined
(840 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo... 35 0.041
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 30 1.2
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 29 2.0
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 29 2.0
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 29 3.5
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 4.7
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 28 6.2
SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces pombe... 28 6.2
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 28 6.2
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 27 8.1
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 27 8.1
>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
Stt3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 752
Score = 35.1 bits (77), Expect = 0.041
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 542 YDTNVLVWLIP-DVYREFKDQAQNHIRLL-HAIVSTLDACQLQRLICLTLQGNLMMFKSD 599
+D L+WL+P VY FK+ H+ ++ ++++ T + RL+ LTL + + +
Sbjct: 368 FDLQFLIWLLPVGVYLCFKELRNEHVFIIIYSVLGTYFCGVMVRLV-LTLTPCVCIAAAV 426
Query: 600 DITTMLSTSLGWETFE 615
I+T+L T +G E E
Sbjct: 427 AISTLLDTYMGPEVEE 442
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 737 KHLEQMRMCCVEQDDMSIFNMECMQKALQQAQSNSSDSLRRQYSELFSLAWEDELPISRR 796
KHLE M ++ D + ++ +Q L ++ +SD R Y L L + DE+ I++R
Sbjct: 361 KHLEAMMEDLLDDPDKNAVELDTIQTRLTDLETENSD--HRVYKILRGLQFTDEM-IAKR 417
Query: 797 ARKL 800
+L
Sbjct: 418 TNEL 421
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 321 EGTDDAIPR--VGSDEPAFSDDEEETITPTIAEDTDDDDLPLS 361
+G D++P + D D+E P+I ED+DD+ L +S
Sbjct: 70 DGAKDSVPLDIIAGDNTVKEDEEASNEIPSIWEDSDDERLMIS 112
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 394 SATALLDACGSPSPTPKALADLFAAAVQEATPLRISNNPAPAELDNAINSPLFSMFNYLI 453
++ A D P P A A + AAAV A L +N P E+ +NS L L
Sbjct: 254 ASMARSDPSQVPESNPSAAAAVAAAAVAAAANL--TNGVNPPEVPRNLNSSLVDAAESLA 311
Query: 454 DSSSGAEHKRKLVLETFKEIHS 475
+ S H+ + HS
Sbjct: 312 NVSQQQHHRHPFARQPDYSAHS 333
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 45 FVITLIRERFTDV-LSLGRDLVRLLQNVARIPEFNQ-LWQDIL 85
FV+TL+R+++ DV +S + RL+ NV I N L+Q+ L
Sbjct: 475 FVMTLLRDQYADVRISALITITRLVSNVTSIAPINAFLFQEYL 517
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 765 QQAQSNSSDSLRRQYSELFSLAWEDELPISRRARKLVSNSMPINANLHSSNEDSEEEEIV 824
+++ S SS S + E + E++ S + S+S + + SS+E EEEE+V
Sbjct: 134 KESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESES--SSSESEEEEEVV 191
Query: 825 KPKQAKRRKKAISDSD 840
+ + K+ + S SD
Sbjct: 192 EKTEEKKEGSSESSSD 207
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 788 EDELPISRRARKLVSNSMPINANLHSSNEDSEEEEIVKPKQAKRRK 833
E+ +PIS + N +NAN SS SE+ VK ++RK
Sbjct: 74 ENNIPISTHNEQ---NDSHVNANKSSSETSSEKPRSVKKPTTRKRK 116
>SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 193
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 815 NEDSEEEEIVKPKQAKRRKKAISDSD 840
NE+++ ++VKP AK+ KK + +SD
Sbjct: 4 NEETDWIDLVKPALAKKPKKIVDNSD 29
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 89 KSLSPTFTNVLQLLQTRTSRRYLQSRLTPDMERKLVFLTSQVRFGHHK 136
+ +SP T +L R + S++ D R L + SQV FG+++
Sbjct: 1026 RDISPQLTKMLLKSNDILGLREIGSKVVDDRVRGLYYAQSQVLFGYYR 1073
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Query: 789 DELPISRRARKLVSNSMPINANLHSSNEDSE-----EEEIVKPKQAKRR 832
DE+P + + R+ S SM N +H + ++ E EEE KPK AKRR
Sbjct: 26 DEMPNNAKRRRR-SQSMIANKRIHQAFQEDEGDEDWEEEEHKPK-AKRR 72
Score = 27.5 bits (58), Expect = 8.1
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 13/122 (10%)
Query: 632 DVLPIIPKLSFKEHSEALT---SVLLMLKQERPTADVVRQLFCRTYDEEDTSVVSTLMYW 688
+VLP+ +F E L +L + P +++ QL R + SV S L Y
Sbjct: 676 NVLPLTAITTFSSMLERLDFSDQILFLALSSSPLSELHPQL--REWFSSKQSVYS-LQYP 732
Query: 689 CQD----YEDKVGDLVAALLSTRYPGTSPNKRKRPGKHSMPPNAPP--SAELVLKHLEQM 742
+D + + +L+ A T PG P KR+ + + P+ PP S ++ LK +Q
Sbjct: 733 TRDSIIAFFQPILELIKAS-PTELPGGIPRKRRVLPELPLAPDPPPFTSQKITLKQTKQA 791
Query: 743 RM 744
M
Sbjct: 792 DM 793
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 788 EDELPISRRARKLVSNSMPINANLHSSNEDSEEEEIVKPKQAKRRKKAI 836
E+ LP+S V NS + + S++ + EE + P QA R+ + I
Sbjct: 271 ENYLPVSLPVYSPVLNSFDDSDSYSSTDSELSEEAFLLPAQASRKTQKI 319
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.134 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,921,559
Number of Sequences: 5004
Number of extensions: 171946
Number of successful extensions: 589
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 15
length of query: 840
length of database: 2,362,478
effective HSP length: 79
effective length of query: 761
effective length of database: 1,967,162
effective search space: 1497010282
effective search space used: 1497010282
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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