Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001430-TA|BGIBMGA001430-PA|undefined
         (840 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    30   0.089
AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex det...    26   1.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   5.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   7.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 29.9 bits (64), Expect = 0.089
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 11/94 (11%)

Query: 753 SIFNMECMQKALQQAQSNSSDSLRRQYSELFSLAWEDELPISRRARK-----------LV 801
           S+ N        ++ +SNS  ++  + SE+FS    D     R+ R            +V
Sbjct: 687 SVANSPTKNADSREYRSNSMGAVMTRNSEMFSSLLSDTEQHFRQHRDSLSPRVENRSAIV 746

Query: 802 SNSMPINANLHSSNEDSEEEEIVKPKQAKRRKKA 835
            +    NAN  +S+E+S EE+     +A++R+K+
Sbjct: 747 HSEASANANSSTSSEESREEKATTSLEAEKREKS 780


>AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 10/50 (20%), Positives = 27/50 (54%)

Query: 249 RIIPNFYPPYAEKVRQGIFNSLQQIIEKRVLPNLHPLFDSQKLDRELRST 298
           R++P      ++++++GI N    ++++R      P+F+ +++   L  T
Sbjct: 134 RVLPGKPTTTSDELKRGIINPEDVMLKRRTGEGSKPIFEREEIKNILNKT 183


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)

Query: 88  PKSLSPTFTNVLQLLQTRTSRRYLQSRLTPD 118
           P  ++PT T V QLL+    RR    R TPD
Sbjct: 157 PTPVTPTPTTVQQLLRRAQIRR--NERRTPD 185


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 552 PDVYREFKDQAQNHIRLLHAIVSTLDACQLQRLICLTLQGNLMMFKSDDITTMLSTSLGW 611
           PD  R + D   N+ RL+  +++  +   +Q  + L+ Q   M  K+  +TT +     W
Sbjct: 32  PDTKRLYDDLLSNYNRLIRPVMNNTETLTVQLGLKLS-QLIEMNLKNQVMTTNVWVEQRW 90

Query: 612 ETFE 615
             ++
Sbjct: 91  NDYK 94


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,152
Number of Sequences: 429
Number of extensions: 9912
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 5
length of query: 840
length of database: 140,377
effective HSP length: 64
effective length of query: 776
effective length of database: 112,921
effective search space: 87626696
effective search space used: 87626696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)