GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001430-TA|BGIBMGA001430-PA|undefined
         (840 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    25   6.2  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    25   8.2  
AY645022-1|AAT92558.1|  165|Anopheles gambiae hairy protein.           25   8.2  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 788  EDELPISRRARKLVSNSMPINANLHSSNEDSEEEEIVKPKQAKRRKKAISD 838
            ED     R+ +KL  +   ++ N++       E E  + K+  RRKK + D
Sbjct: 958  EDPQEAGRKLKKLQDSKDKMSRNVNQKAMVLLEREEEQYKEVMRRKKVVED 1008


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 548 VWLIPDVYREFKDQAQNHIRLLHAIVSTLD------ACQLQRLICLTLQGNLM 594
           VW  PD  R + D   N+ RL+  + +  D        +L +LI L L+  ++
Sbjct: 30  VWANPDAKRLYDDLLSNYNRLIRPVSNNTDTVLVKLGLRLSQLIDLNLKDQIL 82


>AY645022-1|AAT92558.1|  165|Anopheles gambiae hairy protein.
          Length = 165

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 17/66 (25%), Positives = 30/66 (45%)

Query: 387 LDERTSSSATALLDACGSPSPTPKALADLFAAAVQEATPLRISNNPAPAELDNAINSPLF 446
           +  RT+S+ +A     GS S   +   +   ++   A P   +++  P E  +A+NS   
Sbjct: 38  IPSRTASTGSASSGHSGSSSLYDRVPREHATSSPYHAPPSPANSHYEPMECHSAVNSSSN 97

Query: 447 SMFNYL 452
           S   YL
Sbjct: 98  SSTGYL 103


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 850,050
Number of Sequences: 2123
Number of extensions: 35031
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 3
length of query: 840
length of database: 516,269
effective HSP length: 70
effective length of query: 770
effective length of database: 367,659
effective search space: 283097430
effective search space used: 283097430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)