Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001430-TA|BGIBMGA001430-PA|undefined
(840 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14590.1 68417.m02245 expressed protein 226 5e-59
At5g28770.1 68418.m03534 bZIP transcription factor family protei... 33 0.79
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN... 33 1.0
At2g14440.1 68415.m01616 leucine-rich repeat protein kinase, put... 31 2.4
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 31 2.4
At5g59920.1 68418.m07514 DC1 domain-containing protein contains ... 31 3.2
At2g05590.2 68415.m00595 expressed protein similar to nucleolar ... 31 4.2
At2g05590.1 68415.m00594 expressed protein similar to nucleolar ... 31 4.2
At1g05830.1 68414.m00610 trithorax protein, putative / PHD finge... 31 4.2
At5g63740.1 68418.m08000 zinc finger protein-related 30 5.6
At3g47490.2 68416.m05164 HNH endonuclease domain-containing prot... 30 5.6
At3g47490.1 68416.m05165 HNH endonuclease domain-containing prot... 30 5.6
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 30 7.3
At4g00990.1 68417.m00133 transcription factor jumonji (jmjC) dom... 30 7.3
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 30 7.3
At2g40116.1 68415.m04933 phosphoinositide-specific phospholipase... 29 9.7
At2g39620.1 68415.m04857 pentatricopeptide (PPR) repeat-containi... 29 9.7
At1g51730.1 68414.m05829 RWD domain-containing protein contains ... 29 9.7
At1g40129.1 68414.m04766 hypothetical protein 29 9.7
At1g08760.1 68414.m00975 expressed protein similar to At1g21030,... 29 9.7
>At4g14590.1 68417.m02245 expressed protein
Length = 508
Score = 226 bits (552), Expect = 5e-59
Identities = 110/293 (37%), Positives = 183/293 (62%), Gaps = 14/293 (4%)
Query: 9 LDKFPVLICMVVYTYLRLVEDH----NIPQLMNLRQKEVNFVITLIRERFTDVLSLGRDL 64
LD P+++ +Y++LRL+ DH + +L N+++ E+ F + + RE+ L +GRDL
Sbjct: 149 LDDSPLVLTSALYSFLRLLADHYRVLGVVKLENVKRLEIKFCVKMFREQLHLSLKIGRDL 208
Query: 65 VRLLQNVARIPEFNQLWQDILVNPKSLSPTFTNVLQLLQTRTSRRYLQSRLTPDMERKLV 124
+ LLQ+++ + EF ++W D++ N S ++ Q +TS RY R+TP+ME +L
Sbjct: 209 ILLLQDLSHVSEFREIWNDLVSNHCS---------EIYQLKTSSRYFLLRITPEMETQLR 259
Query: 125 FLTSQVRFGHHKKYQEWFQRQYLATPESQSLRSDMIRFIVGVIHPTNELLCSDIIPRWAV 184
FL V+ G HK++Q WF +++L PE ++L D++RF+ VIHPTNE++ S+I+PRWA+
Sbjct: 260 FLLGNVKLGSHKRHQIWFLKKFLLGPEKETLLIDIVRFVCCVIHPTNEIIRSEIMPRWAI 319
Query: 185 IGWLLTTCTSN-VAASNAKLALFYDWLFYDPEKDNIMNIEPAILVMHHSMRSHPAVTATL 243
IGWLL C N + LALFYDWLF+D DNIMN+EPA L+M S+ +P +T +L
Sbjct: 320 IGWLLELCRQNHHIERSVMLALFYDWLFFDERIDNIMNVEPAALLMVWSIPQYPHITHSL 379
Query: 244 LDFLCRIIPNFYPPYAEKVRQGIFNSLQQIIEKRVLPNLHPLFDSQKLDRELR 296
L+FL ++ + + + +G+ ++ ++I K V+ +L + L +L+
Sbjct: 380 LEFLLHLVETYDITRRDTIVRGLTSAFREIERKGVIRSLDIFLANPALAPDLK 432
>At5g28770.1 68418.m03534 bZIP transcription factor family protein
similar to seed storage protein opaque-2(bZIP
family)GI:168428 from Zea mays; contains Pfam profile
PF00170: bZIP transcription factor; identical to cDNA
bZIP protein BZO2H3 GI:10954098
Length = 307
Score = 33.1 bits (72), Expect = 0.79
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 753 SIFNMECMQKALQQAQSNSSDSLRRQYSELFSLAWEDELPISRRARKLVSNSMPINANLH 812
S N+ C A+++ S SD+ SE SLA S +A ++S+++ + L
Sbjct: 76 SKLNLACAAVAMKRDTSGRSDNGGANESEQASLA-------SSKATPMMSSAITSGSELS 128
Query: 813 SSNEDSEEEEIVKPKQAKRRKKAISDSD 840
E+++ E + P KR K+ +S+ +
Sbjct: 129 GDEEEADGETNMNPTNVKRVKRMLSNRE 156
>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
topoisomerase II / DNA gyrase (TOP2) identical to
SP|P30182 DNA topoisomerase II (EC 5.99.1.3) {Arabidopsis
thaliana}
Length = 1473
Score = 32.7 bits (71), Expect = 1.0
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 747 VEQDDMSIFNMECMQKALQQAQSNSSDSLRRQYSELFSLAWE-DELPISRRARKLVSNSM 805
+E D + ++ +QQA + +R + + + + P ++ K S S
Sbjct: 1163 LESLDKELEKLDLKDAQVQQAIEAAQKKIRAKSGAAVKVKRQAPKKPAPKKTTKKASESE 1222
Query: 806 PINANLHSSNEDSEEEEIVKPKQAKRRKKAISDSD 840
A+ + + D+ E+VKPK + KK S+S+
Sbjct: 1223 TTEASYSAMDTDNNVAEVVKPKARQGAKKKASESE 1257
>At2g14440.1 68415.m01616 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 886
Score = 31.5 bits (68), Expect = 2.4
Identities = 49/230 (21%), Positives = 90/230 (39%), Gaps = 17/230 (7%)
Query: 478 SLRCVGFSLLFYLRVCYERDRRSE-----RDSAKRRNVKFKADVYKDYCSYLELKLAES- 531
S+ CV +++ + + R R+S R S + +N +FK K+ + E+ L +
Sbjct: 532 SISCVAVTIIVLVLIFIFRRRKSSTRKVIRPSLEMKNRRFKYSEVKEMTNNFEVVLGKGG 591
Query: 532 ---LADDFERCQEYDTNVLVWLIPDVYREFKDQAQNHIRLLHA-IVSTLDACQLQRLICL 587
+ F ++ VL Y+EFK + + +R+ H +VS + C + L
Sbjct: 592 FGVVYHGFLNNEQVAVKVLSQSSTQGYKEFKTEVELLLRVHHVNLVSLVGYCDKGNDLAL 651
Query: 588 TLQGNLMMFKSDDITTMLSTSLGWETFEQYCLWQLLTAHDISVEDVLPIIPKLSFKEHSE 647
+ ++ ++ LS G ++ + +E L I K
Sbjct: 652 IYE----FMENGNLKEHLSGKRGGPVLNWPGRLKIAIESALGIE-YLHIGCKPPMVHRDV 706
Query: 648 ALTSVLLMLKQERPTAD--VVRQLFCRTYDEEDTSVVSTLMYWCQDYEDK 695
T++LL L+ E AD + R + T+V TL Y +Y K
Sbjct: 707 KSTNILLGLRFEAKLADFGLSRSFLVGSQTHVSTNVAGTLGYLDPEYYQK 756
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 31.5 bits (68), Expect = 2.4
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 750 DDMSIFNMECMQKALQQAQSNSSDSLRRQYSELFSLAWEDELPISRRARKLVSNSMPINA 809
DD S + K A N S +++ S + EDE P + A K+ + ++
Sbjct: 127 DDDSSDEEVAVTKKPAAAAKNGSVKAKKESSSEDDSSSEDE-PAKKPAAKIAKPAAKDSS 185
Query: 810 NLHS-SNEDSEEEEIVKPKQAKRRKKAISDSD 840
+ S+EDSE+E+ K A KA S SD
Sbjct: 186 SSDDDSDEDSEDEKPATKKAAPAAAKAASSSD 217
>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 710
Score = 31.1 bits (67), Expect = 3.2
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 309 NGNGEGVSGIRDEGTDDAIPRVGSDEPAFSDDEEETITPTIAEDTDDDD 357
+G+ +G + D+ +DD V D SDD+ + ++ +++D +DD
Sbjct: 639 DGSDDGSDDVSDDVSDDPSNDVSDDT---SDDDSDVVSDVVSDDASNDD 684
>At2g05590.2 68415.m00595 expressed protein similar to nucleolar
protein C7C (GI:13540302) [Rattus norvegicus]
Length = 303
Score = 30.7 bits (66), Expect = 4.2
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 412 LADLFAAAVQEATPLRISNNPAP-AELDNAINSPLFSMFNYLIDSSSGAE 460
L++LFA + ++ R SN+ +P A L++++ L S F++++ S E
Sbjct: 12 LSNLFADSPSQSASPRYSNSDSPKARLNSSVGKSLSSYFSFVVPQSGNEE 61
>At2g05590.1 68415.m00594 expressed protein similar to nucleolar
protein C7C (GI:13540302) [Rattus norvegicus]
Length = 263
Score = 30.7 bits (66), Expect = 4.2
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 412 LADLFAAAVQEATPLRISNNPAP-AELDNAINSPLFSMFNYLIDSSSGAE 460
L++LFA + ++ R SN+ +P A L++++ L S F++++ S E
Sbjct: 12 LSNLFADSPSQSASPRYSNSDSPKARLNSSVGKSLSSYFSFVVPQSGNEE 61
>At1g05830.1 68414.m00610 trithorax protein, putative / PHD finger
family protein / SET domain-containing protein similar
to trithorax-like protein 1 [Arabidopsis thaliana]
GI:12659210; contains Pfam domain, PF00628: PHD-finger
and PF00856: SET domain
Length = 1056
Score = 30.7 bits (66), Expect = 4.2
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 502 RDSAKRRNVKFKA-DVYKDYCSYLELKLAESLADDFERCQEYDTNVLVW 549
RD + N+KF DV D Y EL + LA FE CQ+++ ++W
Sbjct: 275 RDDMELLNMKFGTNDVVVDGQDYDELVI---LAASFEECQDFEPRDIIW 320
>At5g63740.1 68418.m08000 zinc finger protein-related
Length = 226
Score = 30.3 bits (65), Expect = 5.6
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 309 NGNGEGVSGIRDEGTD-DAIPRVGSDEPAFSDDEEETITPTIAEDTDDDD 357
+G+G+G G DE D DA DE DD+++ A+D DDD+
Sbjct: 62 DGDGDG-DGDEDEDEDADADEDEDEDEDEDDDDDDDDDDDDDADDADDDE 110
>At3g47490.2 68416.m05164 HNH endonuclease domain-containing protein
contains Pfam domain PF01844: HNH endonuclease
Length = 176
Score = 30.3 bits (65), Expect = 5.6
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 787 WEDELPISRRARKLVSNSMPINANLHSSNEDSEEEEIVKPKQAKRRKKAISDS 839
W ISRR L+ + +N S + D+ + +KP +RR +A+S S
Sbjct: 3 WPTTTLISRRICNLLIFFVKLNHKNLSIDSDNPQHSAMKPDPTRRRNRALSSS 55
>At3g47490.1 68416.m05165 HNH endonuclease domain-containing protein
contains Pfam domain PF01844: HNH endonuclease
Length = 234
Score = 30.3 bits (65), Expect = 5.6
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 787 WEDELPISRRARKLVSNSMPINANLHSSNEDSEEEEIVKPKQAKRRKKAISDS 839
W ISRR L+ + +N S + D+ + +KP +RR +A+S S
Sbjct: 3 WPTTTLISRRICNLLIFFVKLNHKNLSIDSDNPQHSAMKPDPTRRRNRALSSS 55
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 29.9 bits (64), Expect = 7.3
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 494 YERDRRSERDSAKRRNVKFKADVYKDYCSYLELKLAESLADDFERCQEYD 543
YERDR S+R + R+ D KD+ Y+E + A + DFER ++D
Sbjct: 114 YERDRYSDRSRERDRS----QDRRKDH-RYIEKERAYEHSHDFERRNDHD 158
>At4g00990.1 68417.m00133 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 840
Score = 29.9 bits (64), Expect = 7.3
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 231 HSMRSHPAVTAT----LLDFLCRI---IPNFYPPYAEKVRQGIFNSLQQIIEKRVLPNLH 283
+S R+H V A ++ +CR +P P +EK LQ ++ K VLP L
Sbjct: 112 YSERTHEEVRAACPFCMMTCICRACLRLPLVIKPPSEKDTDVKLKQLQYLLVK-VLPVLK 170
Query: 284 PLFDSQKLDRELRSTVR 300
++ Q + E+ ST+R
Sbjct: 171 DIYTEQNRELEIESTIR 187
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 29.9 bits (64), Expect = 7.3
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 789 DELPISRRARKLVSNSMPINANLHSSNEDSEEEEIVKPKQAKRRKKAIS 837
D+ P + +V N+ P + SS EDS+EEE K ++ K S
Sbjct: 275 DDEPTPAKKPTVVKNAKPAAKDSSSSEEDSDEEESDDEKPPTKKAKVSS 323
>At2g40116.1 68415.m04933 phosphoinositide-specific phospholipase C
family protein contains Pfam profile: PF00388
phosphatidylinositol-specific phospholipase C
Length = 613
Score = 29.5 bits (63), Expect = 9.7
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 299 VRETFKEFCTNGNGEGVSGIRDEGTDDAIPRVGSDE-PAFSDDEEETITPTIAEDTDDD 356
VR+ F +F G G G G +G D + +G+++ +F DD E+ T A+ D+
Sbjct: 40 VRDAFCQFAVGGGGGGTDGDSSDG-DGSTGVMGAEQLCSFLDDHGESTTVAEAQRLIDE 97
>At2g39620.1 68415.m04857 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 836
Score = 29.5 bits (63), Expect = 9.7
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 727 NAPPSAELVLKHLEQMRMCCVEQDDMSIFNM 757
N SA L+L H MR CCV+ D +S++N+
Sbjct: 179 NGCSSAALLLFH--DMRSCCVDIDHVSLYNL 207
>At1g51730.1 68414.m05829 RWD domain-containing protein contains
Pfam profile PF05773: RWD domain; similar to GCN2
eIF2alpha kinase (GI:6066585) [Mus musculus]; similar to
GCN2beta (GI:10764163) [Mus musculus]; similar to RING
finger protein 25 (RING finger protein AO7)
(Swiss-Prot:Q9QZR0) [Mus musculus]; similar to RING
finger protein 25 (Swiss-Prot:Q96BH1) [Homo sapiens]
Length = 252
Score = 29.5 bits (63), Expect = 9.7
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 302 TFKEFCTNGNGEGVSGIRDEGTDDAIPR-VGSDEPAFSDDEEETITPTIAEDTDDDDLP 359
T +++ +G G G I DE ++ + ++ F DDEE+ + +AE +D P
Sbjct: 191 TGRQWFESGRGRGTVVIADEEDEEEDEEDIDFEDEDFEDDEEDMLEHYLAEKSDSSAPP 249
>At1g40129.1 68414.m04766 hypothetical protein
Length = 567
Score = 29.5 bits (63), Expect = 9.7
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 85 LVNPKSLSPTFTNVLQLLQTRTSRRYLQSRLTPDMERKLVFLTSQVRFGHHKKYQEWFQR 144
LV K L + + ++R +++ LT +ME+ Q+R GHH+ ++ ++
Sbjct: 13 LVAAKELEVAMSTTEERSSHNHNKRLIEA-LTTEMEQSFDNHLDQIRQGHHRA-RKMKEQ 70
Query: 145 QYLATPESQSLRSDMIR 161
+ + P SLRS R
Sbjct: 71 ELKSKPPDNSLRSTQSR 87
>At1g08760.1 68414.m00975 expressed protein similar to At1g21030,
At5g44890, At2g29240, At1g08740; similar to EST
gb|N96641
Length = 748
Score = 29.5 bits (63), Expect = 9.7
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 31/128 (24%)
Query: 723 SMPPNAPPSAELVLKHLEQMRMCCVEQDDMSIFNMECMQKALQQAQSNSSDSLRR---QY 779
S+PP+ + VL+H E ++ +E ALQ+A ++S+SL + Y
Sbjct: 419 SLPPSLSRMGQEVLRHREAAQVVAIE--------------ALQEA--SASESLLQCLIMY 462
Query: 780 SELFSLAWEDE-LPISRRARKL---------VSNSMPINANLHSS--NEDSEEEEIVKPK 827
S+L S A ED+ LP+ + KL ++ S+ +L SS NE++ EE +K
Sbjct: 463 SDLLSTAKEDDPLPVVEQFLKLHSGLKNVQVITESLSKLLSLMSSPDNEENRSEEAIKAA 522
Query: 828 QAKRRKKA 835
K++ A
Sbjct: 523 SEKQKLAA 530
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.134 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,893,860
Number of Sequences: 28952
Number of extensions: 859204
Number of successful extensions: 3024
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2989
Number of HSP's gapped (non-prelim): 43
length of query: 840
length of database: 12,070,560
effective HSP length: 87
effective length of query: 753
effective length of database: 9,551,736
effective search space: 7192457208
effective search space used: 7192457208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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