GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001429-TA|BGIBMGA001429-PA|undefined
         (61 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9F9W8 Cluster: Na+/H+ antiporter; n=6; Bifidobacterium...    32   1.9  
UniRef50_Q1AX04 Cluster: Glycosyl transferase, family 51 precurs...    31   4.5  

>UniRef50_Q9F9W8 Cluster: Na+/H+ antiporter; n=6;
          Bifidobacterium|Rep: Na+/H+ antiporter -
          Bifidobacterium longum
          Length = 690

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 14 LPRVVIATVVTRIPLFKDGGVDPELCIAAGLSPL 47
          L ++V+  +VT +P F D  +DPEL +   ++PL
Sbjct: 31 LVQIVLGVLVTYLPFFPDAKLDPELFMVLFIAPL 64


>UniRef50_Q1AX04 Cluster: Glycosyl transferase, family 51 precursor;
           n=1; Rubrobacter xylanophilus DSM 9941|Rep: Glycosyl
           transferase, family 51 precursor - Rubrobacter
           xylanophilus (strain DSM 9941 / NBRC 16129)
          Length = 678

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 14  LPRVVIATVVTRIPLFKDGGVDPELCIAAGLSPLSTWTMTEADSVYT 60
           LPR V+A    R   ++  GVDPE  + A  + L  W + E  S  T
Sbjct: 98  LPRAVVAVEDRRF--YEHAGVDPEGVLRAAWTDLRAWEVQEGGSTIT 142


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.324    0.137    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,441,676
Number of Sequences: 1657284
Number of extensions: 1961866
Number of successful extensions: 4982
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4981
Number of HSP's gapped (non-prelim): 2
length of query: 61
length of database: 575,637,011
effective HSP length: 41
effective length of query: 20
effective length of database: 507,688,367
effective search space: 10153767340
effective search space used: 10153767340
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 65 (30.3 bits)