GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001429-TA|BGIBMGA001429-PA|undefined
         (61 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           18   6.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    18   6.8  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 18.2 bits (35), Expect = 6.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 35  DPELCIAAGLSPLSTWTMTEADSVYT 60
           DPE+ +A   +PL++  + E  S  T
Sbjct: 83  DPEIPVAPEPAPLASPLVQEPGSSTT 108


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short
          gastrulation protein.
          Length = 947

 Score = 18.2 bits (35), Expect = 6.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 17 VVIATVVTRIPLFKDG 32
          V +AT   + PL  DG
Sbjct: 11 VTLATARNKAPLLDDG 26


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.137    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,632
Number of Sequences: 317
Number of extensions: 330
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 61
length of database: 114,650
effective HSP length: 41
effective length of query: 20
effective length of database: 101,653
effective search space:  2033060
effective search space used:  2033060
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.8 bits)
S2: 34 (17.8 bits)