GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001429-TA|BGIBMGA001429-PA|undefined
         (61 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   1.6  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    24   2.1  
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    23   3.6  

>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 39  CIAAGLSPLSTWT 51
           C++A L PL TWT
Sbjct: 112 CLSAALEPLMTWT 124


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 14  LPRVVIATVVTRIPLFKDGGVDPEL 38
           L R V A  VT  PL+ DG VD ++
Sbjct: 310 LTREVSAFCVTDAPLWMDGSVDNDI 334


>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 5/30 (16%)

Query: 13  GLPRVVIATVVTRIPLFKDGGVDPELCIAA 42
           G P VVI+T     P+ KDG V PE+   A
Sbjct: 155 GCPHVVIST-----PVRKDGTVAPEIVYIA 179


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.137    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,719
Number of Sequences: 5004
Number of extensions: 7150
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 3
length of query: 61
length of database: 2,362,478
effective HSP length: 42
effective length of query: 19
effective length of database: 2,152,310
effective search space: 40893890
effective search space used: 40893890
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)