GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001429-TA|BGIBMGA001429-PA|undefined
         (61 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1275 - 35910992-35911342,35912157-35912390,35912573-359126...    28   1.1  
03_01_0585 - 4331111-4331850,4331960-4332224                           27   1.9  
06_01_0938 - 7229953-7230882                                           26   4.4  
11_01_0478 - 3691581-3691616,3691693-3691842,3691915-3692955,369...    25   7.7  

>01_06_1275 -
           35910992-35911342,35912157-35912390,35912573-35912653,
           35913162-35913407,35913502-35913617,35914813-35915032
          Length = 415

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/44 (25%), Positives = 24/44 (54%)

Query: 18  VIATVVTRIPLFKDGGVDPELCIAAGLSPLSTWTMTEADSVYTV 61
           +I  V   +  + +G +DP   I   +  + TW+MT  ++V+++
Sbjct: 276 MIGLVAALLATYIEGWIDPVGAIILAIYTIRTWSMTVLENVHSL 319


>03_01_0585 - 4331111-4331850,4331960-4332224
          Length = 334

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 12  RGLPRVVIATVVTRIPLFKDGGVDPELCIAAGLSPLSTWTMTEADSVYT 60
           RGL R       T +P F +G VD  L  AA   P    T +  DSV T
Sbjct: 198 RGLKREFSPPAETALPFFTNGFVD--LTTAAAPPPAMMMTSSFTDSVAT 244


>06_01_0938 - 7229953-7230882
          Length = 309

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/44 (31%), Positives = 19/44 (43%)

Query: 17  VVIATVVTRIPLFKDGGVDPELCIAAGLSPLSTWTMTEADSVYT 60
           V +  V T +       V P L  AAGL+   TW +    S +T
Sbjct: 143 VAVCLVATLLAAHDPEAVPPRLARAAGLALQGTWMVQMGFSFFT 186


>11_01_0478 -
          3691581-3691616,3691693-3691842,3691915-3692955,
          3693007-3693459
          Length = 559

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/45 (35%), Positives = 20/45 (44%)

Query: 13 GLPRVVIATVVTRIPLFKDGGVDPELCIAAGLSPLSTWTMTEADS 57
          G P+ VI      +    +GG DP  C  A  +   T T TEA S
Sbjct: 24 GYPQWVILAEHVPLEDEDEGGDDPNSCFTADAASKVTDTETEAAS 68


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.137    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,820,323
Number of Sequences: 37544
Number of extensions: 57882
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 4
length of query: 61
length of database: 14,793,348
effective HSP length: 41
effective length of query: 20
effective length of database: 13,254,044
effective search space: 265080880
effective search space used: 265080880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)