GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001429-TA|BGIBMGA001429-PA|undefined
         (61 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47261| Best HMM Match : HA2 (HMM E-Value=5.8e-16)                   25   6.7  
SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.8  

>SB_47261| Best HMM Match : HA2 (HMM E-Value=5.8e-16)
          Length = 351

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 35  DPELCIAAGLSPLSTWT 51
           DP + IAAGLS  S WT
Sbjct: 160 DPVMIIAAGLSVQSPWT 176


>SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2905

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 22   VVTRIPLFKDGGVDPELCIAAGLSPLST-WTMTE 54
            VVTR PLF  G V   LC +  L+     WTM +
Sbjct: 1500 VVTRAPLFYLGNVFSNLCRSIVLAHRGRYWTMLQ 1533


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.137    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,924,565
Number of Sequences: 59808
Number of extensions: 53532
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 92
Number of HSP's gapped (non-prelim): 2
length of query: 61
length of database: 16,821,457
effective HSP length: 40
effective length of query: 21
effective length of database: 14,429,137
effective search space: 303011877
effective search space used: 303011877
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)