GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001429-TA|BGIBMGA001429-PA|undefined
         (61 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical ...    26   2.7  
AL033514-32|CAA22092.1|  444|Caenorhabditis elegans Hypothetical...    25   8.3  

>AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical
           protein F14F9.3 protein.
          Length = 848

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 7   KRRSTRGLPRVVIATVVTRIPLFKDGGVDPELCIAA 42
           K   T  LPR  I+T +  IP+ K   +  E+C+AA
Sbjct: 705 KEGKTIFLPRATISTEIESIPVIKASVI--EVCVAA 738


>AL033514-32|CAA22092.1|  444|Caenorhabditis elegans Hypothetical
           protein Y75B8A.32 protein.
          Length = 444

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 3   IRRLKRRSTRGLPRVVIATVVTRIPLFKDGGVDPEL 38
           IRR+  + T  + RV   T + +IP  K  G  P +
Sbjct: 211 IRRMPAKKTPSVKRVTNKTAIKKIPAEKLPGKKPRM 246


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.137    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,365,017
Number of Sequences: 27539
Number of extensions: 38721
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 2
length of query: 61
length of database: 12,573,161
effective HSP length: 42
effective length of query: 19
effective length of database: 11,416,523
effective search space: 216913937
effective search space used: 216913937
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)