GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001429-TA|BGIBMGA001429-PA|undefined
         (61 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19650.1 68417.m02887 mitochondrial transcription termination...    27   1.2  
At4g39420.1 68417.m05579 expressed protein  ; expression support...    27   2.1  
At3g06600.1 68416.m00767 expressed protein ; expression supporte...    26   3.6  
At1g79520.1 68414.m09270 cation efflux family protein contains c...    25   8.3  

>At4g19650.1 68417.m02887 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 557

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 1   MMIRRLKRRSTRGLPRVVIATVVTRIPLFKDGGVDPE 37
           M+  +L+     GL +  +  +VT  PL   GG+D E
Sbjct: 195 MLAMKLRGYENLGLSKATVIKLVTSCPLLLVGGIDAE 231


>At4g39420.1 68417.m05579 expressed protein  ; expression supported
           by MPSS
          Length = 781

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 22  VVTRIPLFKDGGVDPELCIAAGLSPLSTWTMT 53
           V+ R+ LF+   V   LC+  G    S W MT
Sbjct: 746 VIDRVILFEGPEVADHLCLENGTKQYSCWLMT 777


>At3g06600.1 68416.m00767 expressed protein ; expression supported
           by MPSS
          Length = 193

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 36  PELCIAAGLSPLSTWTMTEA 55
           PE+C+ A  SP+ST T  EA
Sbjct: 86  PEICLPADDSPVSTITSVEA 105


>At1g79520.1 68414.m09270 cation efflux family protein contains
           cation efflux family protein domain, Pfam:PF01545
          Length = 402

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 17  VVIATVVTRIPLFKDGGVDPELCIAAGLSPLSTWTMTEADSVYTV 61
           V +AT V  +  +    +DP   I   L  +STW  T  ++V+++
Sbjct: 266 VGLATAVLAVKFY--WWIDPSGAILIALYTISTWARTVLENVHSL 308


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.137    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,377,598
Number of Sequences: 28952
Number of extensions: 40726
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 4
length of query: 61
length of database: 12,070,560
effective HSP length: 41
effective length of query: 20
effective length of database: 10,883,528
effective search space: 217670560
effective search space used: 217670560
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)