GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001428-TA|BGIBMGA001428-PA|IPR001762|Disintegrin,
IPR006025|Peptidase M, neutral zinc metallopeptidases, zinc-binding
site, IPR001590|Peptidase M12B, ADAM/reprolysin
         (648 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   2.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   4.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   7.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   7.8  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 200 ANEADTSNDGPKKRTKRQSDYEYT 223
           +N + TS++ PK + K Q++  YT
Sbjct: 101 SNRSSTSSNDPKNQYKNQNNNHYT 124


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 163 KELEDDSDDVQEEYDIELKHEQLEKEKYLDQTNSYHPANEADTSNDGPKKRTK 215
           KEL   S  V+E  +IE+K + + K  +L++      + +  T  + P+  T+
Sbjct: 567 KELLSPSYRVKERGEIEVKGKGIMKTYWLEKREHRSSSTKGITIQEPPQWHTR 619


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 592 VGVVVLVTAFIWIPASCV--VSSY 613
           VGV++ V    W+P  CV  V+SY
Sbjct: 274 VGVIMGVFLICWVPFFCVNIVTSY 297


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 7/27 (25%), Positives = 17/27 (62%)

Query: 559 VCEKTIQDVVERFWDIIEDININNVLG 585
           V  K I ++ +  +DI+ ++++  +LG
Sbjct: 561 VVYKLIDNIKKEIYDILPEVDVEEILG 587


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,005
Number of Sequences: 429
Number of extensions: 9713
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 4
length of query: 648
length of database: 140,377
effective HSP length: 62
effective length of query: 586
effective length of database: 113,779
effective search space: 66674494
effective search space used: 66674494
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)