Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001427-TA|BGIBMGA001427-PA|undefined
         (586 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21791| Best HMM Match : V-set (HMM E-Value=1.4)                    565   e-161
SB_7606| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.022
SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.12 
SB_8071| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)              36   0.12 
SB_40319| Best HMM Match : RecX (HMM E-Value=1.9)                      31   3.4  
SB_25899| Best HMM Match : Ribonuc_2-5A (HMM E-Value=0)                30   4.5  
SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)                  30   6.0  
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)                     30   6.0  
SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.9  

>SB_21791| Best HMM Match : V-set (HMM E-Value=1.4)
          Length = 474

 Score =  565 bits (1395), Expect = e-161
 Identities = 275/494 (55%), Positives = 364/494 (73%), Gaps = 30/494 (6%)

Query: 33  PRKIKPQNIVIRLMEREIHGSRKPGSHFHVVREFYQNVFPNLTIVNVEKPPCFLRKFSPD 92
           PR++  QNIV ++ +RE    R PG  +H  R F QN+FPN TIVNVEKPPCFLRKFSPD
Sbjct: 8   PRRVTNQNIVWKIRQRETVAPR-PGCRWHRGRSFTQNLFPNFTIVNVEKPPCFLRKFSPD 66

Query: 93  GKHFIAFSADQTSLEIYEYRGASSAGDLVAGYPTDLLNADADAHHRIRTHIFYRFFKPKF 152
           G++F+AFS DQ+S+E+YE++GAS+A +L+A         +      IR+ +F  FFK   
Sbjct: 67  GRYFVAFSLDQSSIEVYEFQGASAAEELLA--------REGHQTASIRSKLFGEFFKQTA 118

Query: 153 TVNVCQQRDIRSDRLGNMPVMEQQLNRECSLFTEDGRYVIVGSAAHIPDDLRPHFYHIHS 212
            V V    +               LNRECSLFT+DGRYVIVGSA+++P+D  P F+ I+ 
Sbjct: 119 VVTVAANGE--------------HLNRECSLFTDDGRYVIVGSASYVPEDPHPFFFDIYR 164

Query: 213 NNEAVTPTIRSPLEDYSLHLVDLHQGKLCDTKHFRIDKIYLSHNQGIYLYKEVLAVLSVQ 272
           NNE+V+P  RSPLEDY++H+VDL +G+L D++ F+ DKI+LSHNQG+YLY+++LA+LSVQ
Sbjct: 165 NNESVSPNPRSPLEDYTIHIVDLRKGRLSDSRTFKCDKIFLSHNQGLYLYRDLLAILSVQ 224

Query: 273 HQTIHLYQIV-EGMLIEIRKIGRYCYDDDPFIVSSIIGKSINE--KPFHEETINSLKHRI 329
            QTIH++Q+  +G  IE+R IGR+C++DD  +++   G   N+   P+ E  IN LKHR+
Sbjct: 225 QQTIHIFQVTKDGKFIEVRSIGRFCHEDDELVLTGSRGVENNQIRSPYLETCINGLKHRL 284

Query: 330 LVFLFKRAKKITDETGDPLELRKFYKYFDMFKSLRMWKMQLLDEDHLFIKYASEEVVTLR 389
           +V L++ A +     G    +R+F+++F+ F+ LRMWKMQLLDE  + IKYASEEVVTLR
Sbjct: 285 MVHLWRCAVR----DGSAEAIRRFFQHFEQFRMLRMWKMQLLDETTILIKYASEEVVTLR 340

Query: 390 VAEPNSQSSFFVIYNISQSKVLEIYENTSEALLQLFENYCDCFRNARLCADSQFTCSPSN 449
           VA+PNSQ+SFFVIYN+  ++VL ++ENTSE LL+LFE +CD FRNA L + +QFTCS S+
Sbjct: 341 VADPNSQASFFVIYNMESTEVLAVFENTSEKLLELFEQFCDSFRNAILHSPAQFTCSASS 400

Query: 450 NLYARLTQQRFKQTIVRAIYGGRTEATKRILAQLPISAQSYSGSPYLDLGLFSYDDKWVS 509
           N YAR  Q+RFK TI+ A YGG TEA KR+LAQLPIS+QSYS SPYLDL LFSYDDKWVS
Sbjct: 401 NTYARQIQRRFKHTIINAKYGGHTEAVKRLLAQLPISSQSYSSSPYLDLSLFSYDDKWVS 460

Query: 510 VMERPKAYGEYPIR 523
           VMERPKA G++PIR
Sbjct: 461 VMERPKACGDHPIR 474


>SB_7606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 637

 Score = 37.9 bits (84), Expect = 0.022
 Identities = 18/59 (30%), Positives = 34/59 (57%)

Query: 370 LLDEDHLFIKYASEEVVTLRVAEPNSQSSFFVIYNISQSKVLEIYENTSEALLQLFENY 428
           L D D  F K A E VV L+  EPN + ++ +I ++S+ +  ++YE     +++  E++
Sbjct: 290 LFDSDEQFKKRAYERVVQLQQGEPNVRKAWEMICDVSRKEFEKLYERLGVTIIERGESF 348


>SB_43403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 35.5 bits (78), Expect = 0.12
 Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 73  NLTIVNVEKPPCFLRKFSPDGKHFIAFSADQTSLEIYEY 111
           N+ +V+ + PP    KFSP+GK+ +A + D T L++++Y
Sbjct: 114 NVDLVDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDY 151


>SB_8071| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)
          Length = 478

 Score = 35.5 bits (78), Expect = 0.12
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 369 QLLDEDHLFIKYASEEVVTLRVAEPNSQSSFFVIYNISQSKVLEIYENTSEAL 421
           Q  D +H  + Y  +EV+T  V    S     +IYN ++ K+L  Y    EAL
Sbjct: 39  QRKDNNHFVLTYEVDEVMTSMVTLQISADDVILIYNRAEGKILRAYAQDFEAL 91


>SB_40319| Best HMM Match : RecX (HMM E-Value=1.9)
          Length = 249

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 132 DADAHHRIRTHIFYRFFKPKFTVNVCQQRDIRSDRLGNMPVMEQ 175
           +++A  ++ T + Y  F     V +C QRD+R  RL N P  E+
Sbjct: 205 ESEATDKVYTVVLYGEFNNNMEV-LCSQRDVRHSRLKNPPPAEK 247


>SB_25899| Best HMM Match : Ribonuc_2-5A (HMM E-Value=0)
          Length = 603

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 186 EDGRYVIVGSAAHIPDDLRPHFYHIHSNNEAVTPTIRSP 224
           E+G  ++     HIPD L P + + H++N   +PT  +P
Sbjct: 73  EEGSPLVELQMTHIPDKLMPFYMNHHTHNPNNSPTPPTP 111


>SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)
          Length = 834

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 401 VIYNISQSKVLEIYENTSEALLQLFENYCDCFRNARLCADSQFTC-SPSNNLYARLT 456
           V+++  ++ +  +YE   +A L+          + RLCADS   C S SNNLY  L+
Sbjct: 414 VLFSQEKNTLRYVYEEF-KAKLEALYYVIPSSASHRLCADSHCNCFSMSNNLYINLS 469


>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
          Length = 2568

 Score = 29.9 bits (64), Expect = 6.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 110  EYRGASSAGDLVAGYPTDLLNADAD 134
            EYRG S+ GD ++G P DL +   D
Sbjct: 1766 EYRGVSAFGDRISGLPVDLHSTRVD 1790


>SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 410 VLEIYENTSEALLQLFENYCDCFRNARLCADSQFTCSPSNNLYARLTQQRFKQTIVRAIY 469
           V ++Y      L++ F  +CD FR  R  +   +T   + +L ++LT    K+ +   + 
Sbjct: 509 VTQVYRARYNFLVRSFSRFCDVFRAYRESSWDYYTI--ATDLRSKLTSPPGKEIVAATLC 566

Query: 470 GGRTEATKRILAQLP 484
                 +K+I+  LP
Sbjct: 567 MVMGPESKKIMNSLP 581


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.139    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,242,379
Number of Sequences: 59808
Number of extensions: 870155
Number of successful extensions: 1535
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1525
Number of HSP's gapped (non-prelim): 11
length of query: 586
length of database: 16,821,457
effective HSP length: 86
effective length of query: 500
effective length of database: 11,677,969
effective search space: 5838984500
effective search space used: 5838984500
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 63 (29.5 bits)