Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001427-TA|BGIBMGA001427-PA|undefined
         (586 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    28   0.19 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   4.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 28.3 bits (60), Expect = 0.19
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 446  SPSNNLYARLTQQRFKQTIVRAIYGGRTEATKRILAQL---PISAQ 488
            SPS+N   ++ QQ+ K+ +       +T   +RI+AQ+   PI+ Q
Sbjct: 1052 SPSSNQSQQIQQQQLKRVVTNQQQSIQTSGMQRIIAQIGGKPIAVQ 1097


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 145 YRFFKPKFT--VNVCQQRDIRSDRLGNMPVMEQQLNRE-CSLFTEDGRYVIVGSAAHIPD 201
           YRFFKP     + +   +  R+ R    P     + +    LF  + R V+         
Sbjct: 115 YRFFKPWLGDGLLISTGQKWRNHRKLIAPTFHLNVLKSFIDLFNANARSVVEKMRKENGK 174

Query: 202 DLRPHFYHIHSNNEAVTPT---IRSPLEDYSLHLVDLHQGKLCDTKHFRIDKIYL 253
           +   H Y      + +  T   +  P  D++     +   K+CD  H R  KI+L
Sbjct: 175 EFDCHNYMSELTVDILLETAMGVSKPTRDHNAFEYAMAVMKMCDILHLRHTKIWL 229


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.139    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,050
Number of Sequences: 429
Number of extensions: 8186
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 2
length of query: 586
length of database: 140,377
effective HSP length: 61
effective length of query: 525
effective length of database: 114,208
effective search space: 59959200
effective search space used: 59959200
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 46 (22.6 bits)