GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001427-TA|BGIBMGA001427-PA|undefined
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    30   1.0  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    27   5.5  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    27   7.2  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    27   9.6  
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma...    27   9.6  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    27   9.6  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 412 EIYENTSEALLQLFENYCD--CFRNARLCADSQFTCSPSNNLYARLTQQRFKQTIVRAIY 469
           +++E++   L QL   + D   FR+  + AD  F CSP N L  +     F   + R ++
Sbjct: 117 DLFESSKPCLNQLLSYFSDITAFRSMDVVADIAFVCSP-NFLTLKWNSSLFDDDLARLLF 175


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 414 YENTSEALLQLFENYCDCFRNARLCADSQFTCSPSNNLYARLTQQRFKQTIVRAIYGGRT 473
           Y+N S+   +   N+ + F+N  L   S FT    NN  + L ++  +Q         + 
Sbjct: 446 YKNVSQNTAK--NNFLETFKNVMLLPVSLFTIPSENNSASNLAEKAIEQKEEEDPELSKL 503

Query: 474 EATKRILAQLPISAQSYSGSPYLDL 498
           +A + + A + +S       P  +L
Sbjct: 504 DAARFVPANIYVSKDRLKHLPTTEL 528


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 8/108 (7%)

Query: 322 INSLKHRILVFL--FKRAKKITDETGDPLELRKFYKYFDMFKSLRMWKMQLLDEDHLFIK 379
           +N  +   L FL   K A+   +E    LE  K    F++FK   + +   LDE +L   
Sbjct: 217 LNDAREFSLTFLNTLKLARDFPNEIRSYLEASK---NFNIFKEKEILRNICLDECYLKAY 273

Query: 380 YASEEVVTLRVAEPNSQSSFFVIYNISQSKVLEIYENTSEALLQLFEN 427
           +++E+V   +V  P      F   NI Q   L  +   S +    F N
Sbjct: 274 FSAEDV---KVTTPFETLQQFDGDNILQQWKLSFFSKISHSEKSFFSN 318


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 220 TIRSPLEDYSLHLVDLHQGKLCDTKHFRIDKIYLSHNQGI 259
           T++ P  + +  ++D    KL    + R  K+ L H QG+
Sbjct: 671 TVQKPFSEATAQMIDEEIRKLVKHAYERTKKLLLEHKQGL 710


>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 333 LFKRAKKITDETGDPLELRKFYKYFDMFKSLRMWK 367
           L ++ K   DE  DPLEL KF K  D  + L +W+
Sbjct: 9   LERQFKLKRDEFQDPLELLKFEKNLDYARKL-LWE 42


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 27  CTEKIVPRKIKPQNIVIRLMEREIHGSRKPGSHFHVVREFYQNVFPNLTIVNVEKPPCFL 86
           CT +++   I+P  I I L    +  +R      +   ++Y   F     ++ + PPC +
Sbjct: 433 CTRRLLAVIIEPSIIYICLKNSAVQSNRNVSPSANHNEQWYLVRFTTSATISQDSPPCIV 492


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.139    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,641
Number of Sequences: 5004
Number of extensions: 126350
Number of successful extensions: 300
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 8
length of query: 586
length of database: 2,362,478
effective HSP length: 77
effective length of query: 509
effective length of database: 1,977,170
effective search space: 1006379530
effective search space used: 1006379530
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)