Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001427-TA|BGIBMGA001427-PA|undefined
(586 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0032 - 247971-248107,248369-248468,248861-248959,249617-24... 128 9e-30
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900... 41 0.002
09_02_0384 - 8294914-8297817 31 2.6
08_02_0116 + 12762009-12763021,12763421-12763436 31 2.6
03_05_0969 + 29283905-29284570,29284862-29284930,29286533-292866... 30 4.5
11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558 29 7.8
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 29 7.8
03_01_0333 + 2624073-2625185 29 7.8
>01_01_0032 -
247971-248107,248369-248468,248861-248959,249617-249781,
249860-249940,250316-250384,250695-250790,252232-252282,
253361-253419,254255-254324,254325-254553,254674-255098,
255361-255441
Length = 553
Score = 128 bits (310), Expect = 9e-30
Identities = 88/262 (33%), Positives = 140/262 (53%), Gaps = 30/262 (11%)
Query: 325 LKHRILVFLFKRA-KKITDETGDPLELRK-FYKYFDMFKSLRMWKMQLLDEDHLFIKYAS 382
+K R+L F+F++ + +D+T L+K FY +F + L +WK+
Sbjct: 316 IKQRLLSFIFRKTWNEESDQTLRVQHLKKKFYFHFQDYVDLIIWKVS------------- 362
Query: 383 EEVVTLRVAEPNSQSSFFVIYNISQSKVLEIYENTSEALLQLFENYCDCFR-NARLCADS 441
R E NS +FF +YN+ + ++ +Y+N+SE L LFE + D F N + +
Sbjct: 363 ------RSTEQNS--AFFAVYNMETTDIVSLYQNSSEELYSLFEYFYDHFHTNPQNSSHG 414
Query: 442 QFTCSPSNNLYARLTQQRFKQTIVRAIYGGRTEATKRILAQLPISAQSYSGSPYLDLGLF 501
F S SNN++A L Q R TI + K+++A LP + QS S SPY DL LF
Sbjct: 415 NFISSHSNNVHA-LDQLR---TIKNKANSTSQQFVKKMMASLPYTCQSQSPSPYFDLSLF 470
Query: 502 SYDDKWVSVMERPKAYGEYPIRFYA-RDSGLLKFKIYAGVLGQSVPPSARRLVAFTFHPT 560
YD+K +S ++R + E+PI+F + + ++KFKI G + A+R+ +F FHP
Sbjct: 471 RYDEKLISAIDRHRHCTEHPIKFISVKQPNVVKFKIKPGSDSGASDSRAKRISSFLFHPF 530
Query: 561 DPFAISVQRTNSE-YIVNFHIR 581
P A+S+Q+T + +VN H R
Sbjct: 531 FPLALSIQQTYMQPTVVNLHFR 552
Score = 107 bits (258), Expect = 2e-23
Identities = 77/269 (28%), Positives = 135/269 (50%), Gaps = 37/269 (13%)
Query: 40 NIVIRLMEREIHGSRKPGSHFHVVREFYQNVFPNLTIVNVEKPPCFLRKFSPDGKHFIAF 99
N+ R+ +R+ R PG+ + VR+FY+N+ P+ TI +++ P RKF+ DG + +AF
Sbjct: 9 NLASRVFDRQFLSPR-PGATVNTVRQFYENLVPSYTICDIDCPDYSFRKFTDDGNYLVAF 67
Query: 100 SADQTSLEIYEYRGASSAGDLVAGYPTDLLNADADAHHRI-RTHIFYRFFKPKFTVNVCQ 158
S + L +Y +PT N D+H + F FFK +++++
Sbjct: 68 SRNHQDLIVYR-----------PIWPTFSCNEPCDSHDLPPKAKKFDSFFKQLYSISLAS 116
Query: 159 QRDIRSDRLGNMPVMEQQLNRECSLFTEDGRYVIVGSAAHIPDDLRPHFYHIHSNNEAVT 218
+ + ++ L+ E ++ + ++ +D IH
Sbjct: 117 SNEY--------------ICKDFFLYMECHQFGLFATSTAQSNDSSATEGAIHG-----V 157
Query: 219 PTIRSPLEDYSLHLVDLHQGKLCDTKHFRIDKIYLSHNQGIYLYKEVLAVLSVQHQTIHL 278
P+I E + +LV L G + D K FR D I L+H+ G YLY+++L ++S+++QTIH+
Sbjct: 158 PSI----EKITFYLVRLDDGAILDEKAFRNDFINLAHSIGAYLYEDLLCIVSLRYQTIHV 213
Query: 279 YQIVE-GMLIEIRKIGRYCYDDDPFIVSS 306
QI + G L+E+RKIG +C +DD + S
Sbjct: 214 LQIRDSGNLVEVRKIGAFCQEDDELFLHS 242
>01_04_0143 +
16689471-16689498,16689687-16689818,16689974-16690013,
16690214-16690280,16690349-16690431,16690755-16690821,
16692741-16692821,16693696-16693791,16694172-16694198
Length = 206
Score = 41.1 bits (92), Expect = 0.002
Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 477 KRILAQLPISAQSYSGSPYLDLGLFSYDDKWVSVMER 513
K+++A LP + QS S SPY DL LF Y DK +S ++R
Sbjct: 170 KKMMASLPYTCQSQSPSPYFDLSLFRY-DKLISAIDR 205
>09_02_0384 - 8294914-8297817
Length = 967
Score = 31.1 bits (67), Expect = 2.6
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 366 WKMQLLDEDHLFIKYASEEVVTLRVAEPNSQSSFFVIYNISQSKVLEIYENTSEALLQLF 425
W ++L +HL + + S+ L AE + ++ +S+ ++L++ S + F
Sbjct: 789 WVLKLPQLEHLDLSFCSKLNSVLANAENGERRDASRVHCLSRLRILQLNHLPSLESICTF 848
Query: 426 ENYCDCFR-----NARLCADSQFTCSPSNNLYARLTQQR 459
+ C C L + F P N +ARL Q R
Sbjct: 849 KLVCPCLEYIDVFGCPLLKELPFQFQPDNGGFARLKQIR 887
>08_02_0116 + 12762009-12763021,12763421-12763436
Length = 342
Score = 31.1 bits (67), Expect = 2.6
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 201 DDLRPHFYHIHSNNEAVTPTIRSPLEDYSLHLVDLHQGKLCDTKHF 246
D+L +H V PT PL LH V + +LCD+ F
Sbjct: 112 DELHFSTFHADLEQTLVEPTSELPLSQVDLHYVPCDKEELCDSTSF 157
>03_05_0969 +
29283905-29284570,29284862-29284930,29286533-29286631,
29287016-29287324
Length = 380
Score = 30.3 bits (65), Expect = 4.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 75 TIVNVEKPPCFLRKFSPDGKHFIAFSAD 102
T+++ E PP KFSP+GK +A + D
Sbjct: 192 TLIDDESPPVSFAKFSPNGKFVLAATLD 219
>11_06_0593 + 25344818-25346083,25346164-25346182,25346285-25347558
Length = 852
Score = 29.5 bits (63), Expect = 7.8
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 251 IYLSHNQGIYLYKEVLAVLSVQHQTIHLYQIVEGMLIEIRKIGRYCYDDD 300
I++ H G E+L+ + V H + L I G L+++RK+G +D D
Sbjct: 601 IHIPHQIGRMKNMEILSHVKVSHGGMQL--IAVGQLLKLRKLGVVIHDTD 648
>03_06_0003 +
30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 29.5 bits (63), Expect = 7.8
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 88 KFSPDGKHFIAFSADQTSLEIYE 110
KFSPDGK+F + S D TS++ +E
Sbjct: 134 KFSPDGKYFASGSGD-TSIKFFE 155
>03_01_0333 + 2624073-2625185
Length = 370
Score = 29.5 bits (63), Expect = 7.8
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 226 EDYSLHLVDLHQGKLCDTKHFRIDKIYLSHNQGIYLYKEVLAVLSVQ 272
E Y LV+L G+ C + F+ + +YL+++V A+ V+
Sbjct: 279 ETYDSQLVNLGSGRFCIARFFQTKREGCYDEDDVYLWQDVTALTGVE 325
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.139 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,206,765
Number of Sequences: 37544
Number of extensions: 731079
Number of successful extensions: 1552
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1537
Number of HSP's gapped (non-prelim): 15
length of query: 586
length of database: 14,793,348
effective HSP length: 86
effective length of query: 500
effective length of database: 11,564,564
effective search space: 5782282000
effective search space used: 5782282000
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 63 (29.5 bits)
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