GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001427-TA|BGIBMGA001427-PA|undefined
         (586 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    24   9.8  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    24   9.8  

>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 388 LRVAEPNSQSSFFVIYNISQSKVLEIYENTSEALLQLFENYCDCFRNARLCAD-SQFTCS 446
           LR+  P  + +   I   ++ K LE+ E +S++LL    +  D FR+   C+  S  T +
Sbjct: 344 LRMGRPGRKITRKTIILSNRMKELELKERSSKSLLANVLDIDDDFRHP--CSGISGSTTA 401

Query: 447 PSNNLYARLT 456
              +++ RLT
Sbjct: 402 IGGSVFTRLT 411


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 388 LRVAEPNSQSSFFVIYNISQSKVLEIYENTSEALLQLFENYCDCFRNARLCAD-SQFTCS 446
           LR+  P  + +   I   ++ K LE+ E +S++LL    +  D FR+   C+  S  T +
Sbjct: 344 LRMGRPGRKITRKTIILSNRMKELELKERSSKSLLANVLDIDDDFRHP--CSGISGSTTA 401

Query: 447 PSNNLYARLT 456
              +++ RLT
Sbjct: 402 IGGSVFTRLT 411


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.323    0.139    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,633
Number of Sequences: 2123
Number of extensions: 27514
Number of successful extensions: 47
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 2
length of query: 586
length of database: 516,269
effective HSP length: 68
effective length of query: 518
effective length of database: 371,905
effective search space: 192646790
effective search space used: 192646790
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 50 (24.2 bits)