GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001427-TA|BGIBMGA001427-PA|undefined
         (586 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical pr...    35   0.18 
Z78544-3|CAB01760.1|  395|Caenorhabditis elegans Hypothetical pr...    33   0.56 
L13200-2|ABE73330.1|  810|Caenorhabditis elegans Hypothetical pr...    31   2.3  
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr...    31   2.3  
AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical ...    30   4.0  
U80955-5|AAG01559.2|  573|Caenorhabditis elegans Ferm domain (pr...    30   5.2  
U80955-4|ABB51180.1|  589|Caenorhabditis elegans Ferm domain (pr...    30   5.2  
Z82274-4|CAB05228.1|  429|Caenorhabditis elegans Hypothetical pr...    29   6.9  
Z82274-3|CAB05229.1|  435|Caenorhabditis elegans Hypothetical pr...    29   6.9  
Z81072-13|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p...    29   6.9  
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p...    29   6.9  
Z66513-11|CAH19084.1|  488|Caenorhabditis elegans Hypothetical p...    29   9.1  
Z66513-10|CAH19083.1|  561|Caenorhabditis elegans Hypothetical p...    29   9.1  
Z66513-9|CAA91340.2|  563|Caenorhabditis elegans Hypothetical pr...    29   9.1  
AF040653-10|AAB95030.1|  332|Caenorhabditis elegans Hypothetical...    29   9.1  

>Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical
           protein C14B1.4 protein.
          Length = 376

 Score = 34.7 bits (76), Expect = 0.18
 Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 75  TIVNVEKPPCFLRKFSPDGKHFIAFSADQTSLEIYEY 111
           T+V+ E PP    KFSP+GK+ +A + D T L+++++
Sbjct: 250 TLVDDENPPVAFVKFSPNGKYILASNLDST-LKLWDF 285


>Z78544-3|CAB01760.1|  395|Caenorhabditis elegans Hypothetical
           protein K04G11.4 protein.
          Length = 395

 Score = 33.1 bits (72), Expect = 0.56
 Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 1/38 (2%)

Query: 75  TIVNVEKPPCFLRKFSPDGKHFIAFSADQTSLEIYEYR 112
           T+++ E PP    KFSP+GK+ +A + + T L++++Y+
Sbjct: 269 TLIDEEHPPITHVKFSPNGKYILASNLNNT-LKLWDYQ 305


>L13200-2|ABE73330.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK1236.3b protein.
          Length = 810

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%)

Query: 1   MASGSSSKFIYYEDPPPGAIDEKEFFCTEKIVPRKIKPQNIVIRLMEREIHG-SRKPGSH 59
           +A GS +  I Y D PPG  +     C +  V  K++ +N+      R + G +RKP S 
Sbjct: 316 VARGSRTNMISYHDLPPGTGNAPPMACPQ--VTLKLE-KNVPFEAKIRAVAGYTRKPISE 372

Query: 60  FHVVR-EFYQNVFPNLTIVNVEK 81
              +R    +++F ++ I +V++
Sbjct: 373 VQKMRPSDLESIFHSICIASVQR 395


>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
           protein ZK1236.3a protein.
          Length = 1000

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%)

Query: 1   MASGSSSKFIYYEDPPPGAIDEKEFFCTEKIVPRKIKPQNIVIRLMEREIHG-SRKPGSH 59
           +A GS +  I Y D PPG  +     C +  V  K++ +N+      R + G +RKP S 
Sbjct: 506 VARGSRTNMISYHDLPPGTGNAPPMACPQ--VTLKLE-KNVPFEAKIRAVAGYTRKPISE 562

Query: 60  FHVVR-EFYQNVFPNLTIVNVEK 81
              +R    +++F ++ I +V++
Sbjct: 563 VQKMRPSDLESIFHSICIASVQR 585


>AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical
           protein C33E10.6 protein.
          Length = 1014

 Score = 30.3 bits (65), Expect = 4.0
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 305 SSIIGKSINEKPFHEETINSLKHRILVFL-FKRAKKITDETGDPLELRKFYKYFDMFKSL 363
           S +I  S+N +      I  + +    ++ F   KK  DETG   E+R    +  M  SL
Sbjct: 368 SHLILSSLNNEIIENSNITVIPNNTEKYISFSYRKKKNDETGQTYEIRFLDSFSFMSSSL 427

Query: 364 RMWKMQLLDE 373
            M    L+D+
Sbjct: 428 DMLSKNLVDD 437


>U80955-5|AAG01559.2|  573|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 2,
           isoform a protein.
          Length = 573

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 443 FTCSPSNNLYARLTQQRFKQTIVRAIYGGRTEATKRILAQLPISA-QSYSG--SPYLDLG 499
           FT  PS+NL   LT+ +F   I + I  GR +   ++  +L   A QS  G  +P L   
Sbjct: 115 FTSEPSSNLKEELTRYQFFLQIKQDISSGRLQCPHQLAIELAAFALQSELGDYNPELHTA 174

Query: 500 LF 501
           LF
Sbjct: 175 LF 176


>U80955-4|ABB51180.1|  589|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 2,
           isoform b protein.
          Length = 589

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 443 FTCSPSNNLYARLTQQRFKQTIVRAIYGGRTEATKRILAQLPISA-QSYSG--SPYLDLG 499
           FT  PS+NL   LT+ +F   I + I  GR +   ++  +L   A QS  G  +P L   
Sbjct: 131 FTSEPSSNLKEELTRYQFFLQIKQDISSGRLQCPHQLAIELAAFALQSELGDYNPELHTA 190

Query: 500 LF 501
           LF
Sbjct: 191 LF 192


>Z82274-4|CAB05228.1|  429|Caenorhabditis elegans Hypothetical
           protein JC8.6b protein.
          Length = 429

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 423 QLFENYCDCFRNARLCADSQFTCSPSNNLYARLTQQRFKQTIVR 466
           Q  + YCDCF N   C D       +N  Y     +  +Q++ R
Sbjct: 177 QCLKLYCDCFANGEFCRDCNCKDCHNNIEYDSQRSKAIRQSLER 220


>Z82274-3|CAB05229.1|  435|Caenorhabditis elegans Hypothetical
           protein JC8.6a protein.
          Length = 435

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 423 QLFENYCDCFRNARLCADSQFTCSPSNNLYARLTQQRFKQTIVR 466
           Q  + YCDCF N   C D       +N  Y     +  +Q++ R
Sbjct: 183 QCLKLYCDCFANGEFCRDCNCKDCHNNIEYDSQRSKAIRQSLER 226


>Z81072-13|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
           protein F30A10.10 protein.
          Length = 1262

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 10/102 (9%)

Query: 163 RSDRLGNMPVMEQQLNRECSLFTEDGRYVIVGSAAHIPDDLRPHFYHIHSNNEAVTPTIR 222
           +SD +   PV+  QLNR    +T  GR  +    A+ P ++    +     N ++ P   
Sbjct: 293 QSDYVKLPPVIVIQLNRY--KYTSKGRQKLKTPMAY-PREIPAKAFQ--RTNNSIPP--- 344

Query: 223 SPLEDYSLHLVDLHQGKLCDTKHFRIDKIYLSHNQGIYLYKE 264
            P E Y L  V +H+G   +  H+  D I    NQ  Y Y +
Sbjct: 345 -PAEMYDLFAVTIHEGNNAECGHY-YDLIKSPLNQKWYRYND 384


>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
           protein F30A10.10 protein.
          Length = 1262

 Score = 29.5 bits (63), Expect = 6.9
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 10/102 (9%)

Query: 163 RSDRLGNMPVMEQQLNRECSLFTEDGRYVIVGSAAHIPDDLRPHFYHIHSNNEAVTPTIR 222
           +SD +   PV+  QLNR    +T  GR  +    A+ P ++    +     N ++ P   
Sbjct: 293 QSDYVKLPPVIVIQLNRY--KYTSKGRQKLKTPMAY-PREIPAKAFQ--RTNNSIPP--- 344

Query: 223 SPLEDYSLHLVDLHQGKLCDTKHFRIDKIYLSHNQGIYLYKE 264
            P E Y L  V +H+G   +  H+  D I    NQ  Y Y +
Sbjct: 345 -PAEMYDLFAVTIHEGNNAECGHY-YDLIKSPLNQKWYRYND 384


>Z66513-11|CAH19084.1|  488|Caenorhabditis elegans Hypothetical
           protein F54D5.15b protein.
          Length = 488

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 18  GAIDEKEFFCTEKIVPRKIKPQNIVIRLMEREIHGSRKPGSHFHVVREFYQNVFPNLTIV 77
           GA   ++  C+  I P  + P++  ++L +  ++ + +P +++H    + Q   PNL+ V
Sbjct: 247 GANSRRDSMCSLSIAP-PLPPKSDAMQLRQATVNHASRPPTNYHQNGGYGQQYEPNLSSV 305

Query: 78  NV 79
            +
Sbjct: 306 PI 307


>Z66513-10|CAH19083.1|  561|Caenorhabditis elegans Hypothetical
           protein F54D5.15c protein.
          Length = 561

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 18  GAIDEKEFFCTEKIVPRKIKPQNIVIRLMEREIHGSRKPGSHFHVVREFYQNVFPNLTIV 77
           GA   ++  C+  I P  + P++  ++L +  ++ + +P +++H    + Q   PNL+ V
Sbjct: 320 GANSRRDSMCSLSIAP-PLPPKSDAMQLRQATVNHASRPPTNYHQNGGYGQQYEPNLSSV 378

Query: 78  NV 79
            +
Sbjct: 379 PI 380


>Z66513-9|CAA91340.2|  563|Caenorhabditis elegans Hypothetical
           protein F54D5.15a protein.
          Length = 563

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 18  GAIDEKEFFCTEKIVPRKIKPQNIVIRLMEREIHGSRKPGSHFHVVREFYQNVFPNLTIV 77
           GA   ++  C+  I P  + P++  ++L +  ++ + +P +++H    + Q   PNL+ V
Sbjct: 322 GANSRRDSMCSLSIAP-PLPPKSDAMQLRQATVNHASRPPTNYHQNGGYGQQYEPNLSSV 380

Query: 78  NV 79
            +
Sbjct: 381 PI 382


>AF040653-10|AAB95030.1|  332|Caenorhabditis elegans Hypothetical
           protein K05F6.9 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 399 FFVIYNISQSKVLEIYENTSEALLQLFENYCDCFRNARL 437
           F  I N S+  VLE +EN++E   Q F+   DC ++  +
Sbjct: 113 FLYIINPSKIDVLEYFENSAEFHEQRFQISVDCLKDLNI 151


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.139    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,296,801
Number of Sequences: 27539
Number of extensions: 680241
Number of successful extensions: 1437
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1427
Number of HSP's gapped (non-prelim): 20
length of query: 586
length of database: 12,573,161
effective HSP length: 85
effective length of query: 501
effective length of database: 10,232,346
effective search space: 5126405346
effective search space used: 5126405346
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)