GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001427-TA|BGIBMGA001427-PA|undefined
         (586 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10180.1 68417.m01668 light-mediated development protein 1 / ...   214   1e-55
At2g04270.4 68415.m00419 glycoside hydrolase starch-binding doma...    31   2.1  
At2g04270.2 68415.m00417 glycoside hydrolase starch-binding doma...    31   2.1  
At2g04270.1 68415.m00416 glycoside hydrolase starch-binding doma...    31   2.1  
At1g30560.1 68414.m03739 transporter, putative similar to glycer...    31   2.8  
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea...    30   4.9  

>At4g10180.1 68417.m01668 light-mediated development protein 1 /
           deetiolated1 (DET1) identical to Light-mediated
           development protein DET1 (Deetiolated1)
           (Swiss-Prot:P48732) [Arabidopsis thaliana]
          Length = 543

 Score =  214 bits (523), Expect = 1e-55
 Identities = 169/576 (29%), Positives = 282/576 (48%), Gaps = 73/576 (12%)

Query: 40  NIVIRLMEREIHGSRKPGSHFHVVREFYQNVFPNLTIVNVEKPPCFLRKFSPDGKHFIAF 99
           N+  R+ ER+I  +  PG+  +  R FY+N+ P+ T+ +VE P    RKF+ DG   I+F
Sbjct: 6   NVTARVFERQIR-TPPPGASVNRARHFYENLVPSYTLYDVESPDHCFRKFTEDGLFLISF 64

Query: 100 SADQTSLEIYEYRGASSAGDLVAGYPTDLLNADADAHHRIRTHIFYRFFKPKFTVNVCQQ 159
           S +   L +Y     + +        TD          R R   F  FF   ++VN+   
Sbjct: 65  SRNHQELIVYRPSWLTYS-------TTDDSTTTLPPLPR-RASKFDSFFTQLYSVNLASS 116

Query: 160 RDIRSDRLGNMPVMEQQLNRECSLFTEDGRY-VIVGSAAHIPDDLRPHFYHIHSNNEAVT 218
            ++              + ++  L+ +  R+ +   S A I D   P       +N+AV 
Sbjct: 117 NEL--------------ICKDFFLYHQTRRFGLFATSTAQIHDSSSP-------SNDAV- 154

Query: 219 PTIRSPLEDYSLHLVDLHQGKLCDTKHFRIDKIYLSHNQGIYLYKEVLAVLSVQHQTIHL 278
           P + S ++  +  L+ L  G + D + F  D + L+HN G++LY ++LA+LS+++Q IHL
Sbjct: 155 PGVPS-IDKITFVLLRLDDGVVLDERVFLHDFVNLAHNMGVFLYDDLLAILSLRYQRIHL 213

Query: 279 YQIVE-GMLIEIRKIGRYCYDDDPFIVS---------------SIIGK------------ 310
            QI + G L++ R IG +C +DD   ++               S+ G             
Sbjct: 214 LQIRDSGHLVDARAIGYFCREDDELFLNSSSQAMMSQDKSKQQSLSGSKEDDTGENGLRH 273

Query: 311 SINEKPFHEETINSLKHRILVFLFKRA-KKITDETGDPLELRK-FYKYFDMFKSLRMWKM 368
           S+++       ++ +K R+L F+F+    + +D       L+K FY +F  +  L +WK+
Sbjct: 274 SLSQPSGSNSFLSGVKQRLLSFIFREIWNEESDNVMRVQSLKKKFYFHFQDYVDLIIWKV 333

Query: 369 QLLDEDHLFIKYASEEVVTLRVAEPNSQSSFFVIYNISQSKVLEIYENTSEALLQLFENY 428
           Q LD  HL IK+ S +    R A+ +   +FF +YN+  + ++  Y+N++E L QLFE +
Sbjct: 334 QFLDRQHLLIKFGSVDGGVTRSADHHP--AFFAVYNMETTDIVAFYQNSAEDLYQLFEQF 391

Query: 429 CDCFRNARLCADSQFTCSPSNNLYARLTQQRFKQTIVRAIYGGRTEATKRILAQLPISAQ 488
            D F  +       F  S SNN+YA L Q ++ +    +     ++  K++L  LP S Q
Sbjct: 392 SDHFTVSSSTPFMNFVTSHSNNVYA-LEQLKYTKNKSNSF----SQFVKKMLLSLPFSCQ 446

Query: 489 SYSGSPYLDLGLFSYDDKWVSVMERPKAYGEYPIRFYA-RDSGLLKFKIYAGVLGQSVPP 547
           S S SPY D  LF +D+K +S  +R +   + PI+F + R    LKFKI  G    +   
Sbjct: 447 SQSPSPYFDQSLFRFDEKLISAADRHRQSSDNPIKFISRRQPQTLKFKIKPGPECGTADG 506

Query: 548 SARRLVAFTFHPTDPFAISVQRT--NSEYIVNFHIR 581
            ++++ +F FHP  P AIS+Q+T      +VN H R
Sbjct: 507 RSKKICSFLFHPHLPLAISIQQTLFMPPSVVNIHFR 542


>At2g04270.4 68415.m00419 glycoside hydrolase starch-binding
           domain-containing protein contains Pfam profile: PF00686
           starch binding domain
          Length = 713

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 315 KPFHEE-TINSLKHRILVFLFKRAKKITDETG 345
           KPF +E T+N  +H++ + L K+A  I D +G
Sbjct: 662 KPFMDEKTVNERQHQVAISLLKKADAIADSSG 693


>At2g04270.2 68415.m00417 glycoside hydrolase starch-binding
           domain-containing protein contains Pfam profile: PF00686
           starch binding domain
          Length = 871

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 315 KPFHEE-TINSLKHRILVFLFKRAKKITDETG 345
           KPF +E T+N  +H++ + L K+A  I D +G
Sbjct: 820 KPFMDEKTVNERQHQVAISLLKKADAIADSSG 851


>At2g04270.1 68415.m00416 glycoside hydrolase starch-binding
           domain-containing protein contains Pfam profile: PF00686
           starch binding domain
          Length = 996

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 315 KPFHEE-TINSLKHRILVFLFKRAKKITDETG 345
           KPF +E T+N  +H++ + L K+A  I D +G
Sbjct: 945 KPFMDEKTVNERQHQVAISLLKKADAIADSSG 976


>At1g30560.1 68414.m03739 transporter, putative similar to
          glycerol-3-phosphate transporter (glycerol 3-phosphate
          permease) [Homo sapiens] GI:7543982
          Length = 510

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 1  MASGSSSKFIYYEDPPPGAIDEKEFFCTEKIVPRKIKPQNIVIRLMER-EIHGSRKPGS 58
          MAS +SS+F+Y E  PPG    + F  + K+  ++ +    V+  +     H +RKP S
Sbjct: 1  MASWTSSEFLYEEVKPPGIHFLERFRRSGKLSFKQYQAMVFVLTFIAYIAFHATRKPNS 59


>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
           family protein similar to C. elegans putative WD-repeat
           protein C14B1.4 (SP:Q17963)
          Length = 333

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 14/70 (20%), Positives = 34/70 (48%)

Query: 401 VIYNISQSKVLEIYENTSEALLQLFENYCDCFRNARLCADSQFTCSPSNNLYARLTQQRF 460
           ++ + S  K + ++  T+ +L+  +E +     +    +DS +TCS S++   R+   R 
Sbjct: 57  LLASASVDKTMILWSATNYSLIHRYEGHSSGISDLAWSSDSHYTCSASDDCTLRIWDARS 116

Query: 461 KQTIVRAIYG 470
               ++ + G
Sbjct: 117 PYECLKVLRG 126


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.139    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,250,476
Number of Sequences: 28952
Number of extensions: 620005
Number of successful extensions: 1442
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1434
Number of HSP's gapped (non-prelim): 10
length of query: 586
length of database: 12,070,560
effective HSP length: 85
effective length of query: 501
effective length of database: 9,609,640
effective search space: 4814429640
effective search space used: 4814429640
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)