Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001426-TA|BGIBMGA001426-PA|IPR004344|Tubulin-tyrosine
ligase
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ...    49   1e-05
At2g31900.1 68415.m03897 myosin family protein contains Pfam pro...    39   0.012
At3g26920.1 68416.m03368 F-box family protein contains F-box dom...    31   1.8  
At5g66600.1 68418.m08395 expressed protein contains Pfam profile...    29   7.1  
At5g07860.1 68418.m00904 transferase family protein similar to a...    29   7.1  
At4g31410.2 68417.m04457 expressed protein                             29   7.1  
At4g31410.1 68417.m04456 expressed protein                             29   7.1  
At3g24630.1 68416.m03093 hypothetical protein                          29   7.1  
At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catal...    29   9.4  
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos...    29   9.4  
At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family pr...    29   9.4  
At4g35580.1 68417.m05055 no apical meristem (NAM) family protein...    29   9.4  
At3g55310.1 68416.m06143 short-chain dehydrogenase/reductase (SD...    29   9.4  
At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:4...    29   9.4  

>At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein
           contains tubulin-tyrosine ligase family domain,
           Pfam:PF03133
          Length = 867

 Score = 48.8 bits (111), Expect = 1e-05
 Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 22/211 (10%)

Query: 118 NKTFIIKPECGSQGRGIYLTKSLKDI---KPSDKLICQVYLSKPFLVDGYKFDIRVYTLI 174
           N  +I+KP   ++     +T +L  I     +   ICQ Y+  P L  G KFD+R   L+
Sbjct: 644 NNLWILKPWNMARTIDTSITDNLSAIIRMMETGPKICQKYIEHPALFKGNKFDLRYVVLV 703

Query: 175 TSCDPLRIFVYNEGLVRFATSRYADPNANNTTNVFMHLTNYALNKHSRTYVYDSEAGSKR 234
            S DPL I++     VR +     +P +    + F + T++ +  + R   +   A   R
Sbjct: 704 RSIDPLEIYLIEIFWVRLSN----NPYSLEKHSFFEYETHFTVMNYGRKLNHKPTAEFVR 759

Query: 235 KISTLNKILLSQGVDLDKLWHSIDEVIVKTIISAWPILKHSYHACFPSHDMVHACFEILG 294
           +    + +   + +D+    H   + +++ +  A   L H       S  M        G
Sbjct: 760 EFEQEHNV---KWMDI----HEKVKQVIRAVFEA-AALAHPEMQSPKSRAM-------YG 804

Query: 295 FDILLDHKLHPYILEVNHSPSFHTDTQLDRE 325
            D++LD    P ILEV + P      + D E
Sbjct: 805 VDVMLDSSFEPKILEVTYCPDCMRACKYDME 835


>At2g31900.1 68415.m03897 myosin family protein contains Pfam
            profiles: PF00063 myosin head (motor domain), PF01843 DIL
            domain, PF00612 IQ calmodulin-binding motif, PF02736
            myosin N-terminal SH3-like domain
          Length = 1556

 Score = 38.7 bits (86), Expect = 0.012
 Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 32   KKKKRKRSQITICL---ANCRYESIRKVASAFGMREVSEEDAWNFYWTDMSVSVERAKEM 88
            K KK     + +C+      R +++R V  +  +  ++++ A    W ++   V + +  
Sbjct: 1299 KLKKEINPLLNLCIHAPRPTRAKTLRDVTKSIHLTTIAKQQASYVQWQNI---VNKLEHT 1355

Query: 89   KRFQRINHYPGMLEICSFGEALNYSKTRKNKTFIIKPECGSQGRGIYLTKSLKDIK 144
              F   NH P M+    F +  +Y   +   + +++ EC S   G YL   L +++
Sbjct: 1356 LTFMAENHVPSMITRKLFHQVFSYINVQLFNSLLLRRECCSVSNGEYLKMGLHELE 1411


>At3g26920.1 68416.m03368 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 565

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 164 YKFDIRVYTLITSCDPL-RIFVYNEGLVRFATSRYADPNANNTT----NVFMHLTNYALN 218
           YK+D  VY L++ C  L  + VY   L+   T   A P+    T    N   + T Y +N
Sbjct: 432 YKYDDSVYNLLSGCPNLENLVVYRGNLLEVETFTIAVPSLQRLTIYDDNDGEYCTGYVIN 491

Query: 219 KHSRTYV 225
             S  Y+
Sbjct: 492 APSLKYL 498


>At5g66600.1 68418.m08395 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547; expression
           supported by MPSS
          Length = 614

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 11  EDDTSQPTSRAAPVIPVDAMRKKKKRKRSQITICLANCRYESIRKVASAFGMREVSEEDA 70
           +DDT   T +    +  D   + KK + + +     +  +       SAFG R+ S ED+
Sbjct: 183 DDDTPSKTDQHTVPLLDDNQNQSKKTEIAAVDRDQMDPSFRRSHSQRSAFGSRKASPEDS 242

Query: 71  W 71
           W
Sbjct: 243 W 243


>At5g07860.1 68418.m00904 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase,
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 454

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 499 DSEEDKNKATRIQSKQPIPEESKPQYVLCSFEPDPIVEKDER 540
           +S+ED NK   +++     E S P Y L   EPD  + + ER
Sbjct: 195 NSQEDNNKFLCLKNPPIFREVSGPMYSLPFSEPDESISQSER 236


>At4g31410.2 68417.m04457 expressed protein
          Length = 308

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 344 DKKRVLEEDRKRIRDRLLQTNKYAETTTIDEKDREKTPWQTQIQWE 389
           +KKR  EE+R R     L+  K+A++   D +  E  P   ++ WE
Sbjct: 124 EKKRCCEEERCRFMGTYLELRKHAQSEHPDSRPSEIDP-ARKLDWE 168


>At4g31410.1 68417.m04456 expressed protein
          Length = 308

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 344 DKKRVLEEDRKRIRDRLLQTNKYAETTTIDEKDREKTPWQTQIQWE 389
           +KKR  EE+R R     L+  K+A++   D +  E  P   ++ WE
Sbjct: 124 EKKRCCEEERCRFMGTYLELRKHAQSEHPDSRPSEIDP-ARKLDWE 168


>At3g24630.1 68416.m03093 hypothetical protein
          Length = 724

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 346 KRVLEEDRKRIRDRLLQTNKYAETTTIDEKDR 377
           K   EE RK IR+  L+ N  ++TTTI+ K R
Sbjct: 176 KDCYEELRKVIRESFLRQNLVSQTTTIETKKR 207


>At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha
           catalytic subunit, putative similar to SP|O48653 DNA
           polymerase alpha catalytic subunit (EC 2.7.7.7) {Oryza
           sativa}; contains Pfam profiles: PF03175 DNA polymerase
           type B, organellar and viral, PF00136 DNA polymerase
           family B, PF03104 DNA polymerase family B, exonuclease
           domain
          Length = 1492

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 22  APVIPVDAMRKKKKRKRSQITICLANCRYESIRKVASAFGMREVSEEDAWNFYWTDMSVS 81
           A V P ++ RKK  R++   T+ +   + + +  VAS+ GM+E SE     +    +S+ 
Sbjct: 182 AQVTPDESDRKKHTRRKLPGTVPVTIFKNKKLFSVASSMGMKE-SEPTPSTYEGDSVSMD 240

Query: 82  VERAKE 87
            E  KE
Sbjct: 241 NELMKE 246


>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
            identical to CIP1 (GI:836950) [Arabidopsis thaliana]
          Length = 1305

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 11/104 (10%)

Query: 283  HDMVH-ACFEILGFDILLDH-KLHPYILEVNHSPSFHTDTQLDREVKE-----NLLTDTF 335
            HD ++ A  EI+    L+++ K     L+V  S    T+ +L+RE +E     N +TD  
Sbjct: 969  HDKINVASSEIMALTELINNLKNELDSLQVQKS---ETEAELEREKQEKSELSNQITDVQ 1025

Query: 336  TMLNIWQCDKKRVLEEDRKRIRDRLLQTNKYAETTTIDEKDREK 379
              L + Q      LEE+ K+I +   +T       T+D K+ ++
Sbjct: 1026 KAL-VEQEAAYNTLEEEHKQINELFKETEATLNKVTVDYKEAQR 1068


>At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 298

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 12/115 (10%)

Query: 152 QVYLSKPFLVDGYK-----FDIRVYTLITSCDPLRI---FVYNEGLVRFATSRYADPNAN 203
           +V  S  FL+D Y       D  V T I    P+     ++  E  ++F    +  P  +
Sbjct: 134 KVAASSGFLLDTYNSVNPDIDSAVSTKIPEHSPVSAVSSYLRTEPSLQFVQHDFWQPKTS 193

Query: 204 -NTTNVFMHLTNYALNKHSRTYVYDSEAGSKRKISTLNKILLSQGVDLDKLWHSI 257
             T N F   TN  L    +T    S   S+R ++TL + L S GV++ +   S+
Sbjct: 194 CGTINCF---TNELLTSDEKTSASLSTVCSQRVLNTLTEALKSSGVNMSETMISV 245


>At4g35580.1 68417.m05055 no apical meristem (NAM) family protein
           similar to TIP [Arabidopsis thaliana] GI:9408601;
           contains Pfam profile PF02365: No apical meristem (NAM)
           protein
          Length = 512

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 389 EESHLGNFRRVYPVGEQYASLFQQPSGSLYTGTASSRARGDCTRIQREEFQQSKAKAEA 447
           E   +     V P  ++ A+ + + SGSL       RARG   +++ E F   + + ++
Sbjct: 420 EREEVNEGHTVIPEAKEAAAKYSEKSGSLVKPQIKLRARGTIGQVKGERFADDEVQVQS 478


>At3g55310.1 68416.m06143 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 298

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 535 VEKDERERVNLLAQRDFLIRSYGMLEQARILLDLFDDEENWDFKTGRRKEIWCLWATVSY 594
           ++K  RE  ++  + D LI + G+    ++ LDL +DE +  F T  +      W    Y
Sbjct: 106 IQKAVREAWDIFGKIDALINNAGIRGNVKLSLDLSEDEWDNVFNTNLKGP----WLVAKY 161

Query: 595 FCL 597
            C+
Sbjct: 162 VCV 164


>At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:433663
            from (Arabidopsis thaliana)
          Length = 1520

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 13/55 (23%), Positives = 27/55 (49%)

Query: 90   RFQRINHYPGMLEICSFGEALNYSKTRKNKTFIIKPECGSQGRGIYLTKSLKDIK 144
            R  R N+ P +L    FG+  ++   +   + +++ EC S   G Y+   L +++
Sbjct: 1324 RTMRANYVPSLLISKVFGQIFSFINVQLFNSLLLRRECCSFSNGEYVKTGLAELE 1378


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.133    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,789,434
Number of Sequences: 28952
Number of extensions: 637857
Number of successful extensions: 1477
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1468
Number of HSP's gapped (non-prelim): 17
length of query: 636
length of database: 12,070,560
effective HSP length: 86
effective length of query: 550
effective length of database: 9,580,688
effective search space: 5269378400
effective search space used: 5269378400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)