Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001426-TA|BGIBMGA001426-PA|IPR004344|Tubulin-tyrosine
ligase
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom... 59 2e-09
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 28 3.4
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 28 4.5
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 28 4.5
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom... 28 4.5
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi... 27 7.9
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 27 7.9
>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 59.3 bits (137), Expect = 2e-09
Identities = 52/183 (28%), Positives = 79/183 (43%), Gaps = 22/183 (12%)
Query: 150 ICQVYLSKPFLVDGYKFDIRVYTLITSCDPLRIFVYNEGLVRFATSRYADPNANNTTNVF 209
+ Q Y+SKP L+D KF IR Y L T L ++++NE L A +Y P + +F
Sbjct: 208 LVQKYISKPLLLDHRKFHIRAYVLATGA--LSVYLFNEMLCLLARDKYKKPTPDPDL-LF 264
Query: 210 MHLTNYALNKHSRTYVYDSEAGSKRKISTLNKILLSQGVDLDKLWHSIDEVIVKTIISAW 269
HL+N L G + S++ + + D ++ SI +I +A
Sbjct: 265 SHLSNTCLQ------------GDNVEQSSIRDFWNTSIENKDDIFKSILNIIGDVFEAA- 311
Query: 270 PILKHSYHACFPSHDMVHACFEILGFDILLDHKLHPYILEVNHSPSFHTDTQLDREVKEN 329
H + CFEI G D L+D + Y+LEVN P F + + EN
Sbjct: 312 -ATTQGIH-----FQPLENCFEIFGVDFLVDCESQVYLLEVNSYPDFKQTGKNLSNIIEN 365
Query: 330 LLT 332
L +
Sbjct: 366 LFS 368
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 28.3 bits (60), Expect = 3.4
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
Query: 500 SEEDKNKATRIQSKQPIPE-ESKPQYVLCSFEPDPIVEKDERERVNLLAQRDFLIRSYGM 558
SE K + K +PE E+K Y + P + RER L +++ + YG
Sbjct: 145 SEFSKQFFSERLCKPNVPEPETKDSYGFGARYGYPTDPRISRERAKLRMWKEYFLL-YGA 203
Query: 559 LEQARILLDLFDDEENWDFKTGRRKEIWCLWATVSYFCLTKDLEFHH 605
+ I + LF + R EIW L + YF L E+ H
Sbjct: 204 -NLSLIRVSLFSKLVRIELPNKLRGEIWELTSGSMYFRLENSDEYDH 249
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 4 YDAKLYGEDDTSQPTSRAAPVIPVD-AMRKKKKRKRSQITICLANCRYESIRKVASAFGM 62
+D D + P +A ++ + AM KK+K+K+ ++I L+ + +K AS+
Sbjct: 325 FDPTSLASDTWASPAEKALNLVRMQKAMAKKEKKKKKVLSISLSGKKVVVDQKEASSESS 384
Query: 63 REVSEE 68
E +E
Sbjct: 385 DEDQDE 390
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 27.9 bits (59), Expect = 4.5
Identities = 21/105 (20%), Positives = 42/105 (40%)
Query: 292 ILGFDILLDHKLHPYILEVNHSPSFHTDTQLDREVKENLLTDTFTMLNIWQCDKKRVLEE 351
I F + + Y L + + S H + +L R+ + MLN R++E
Sbjct: 463 ITKFSVEKEKAEQKYFLTMKSTDSLHAEVKLLRQKYQKTNEIISKMLNSQDTAVHRIIEF 522
Query: 352 DRKRIRDRLLQTNKYAETTTIDEKDREKTPWQTQIQWEESHLGNF 396
+ + R ++ N ++TT K + ++ + S+L F
Sbjct: 523 EDQLARLSSVRNNSIKQSTTFQVKKSSQKSTIQNLEEKVSYLQQF 567
>SPBC29A3.08 |pof4||elongin-A, F-box protein
Pof4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 514 QPIPEESKPQYVLCSFEPDPIVEKDERERVNLLAQRDFLIRSYGMLEQARILLDLFDD 571
+PI E+++P++++ E P ++ D + +D ++R +G+ Q R +L+ DD
Sbjct: 31 KPILEKARPEHLIDLEEKSPHLKVDTQP-----LWKDHVLRDFGLELQKRTILNNIDD 83
>SPAP27G11.02 |||TPR repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 361 LQTNKYAETTTIDEKDREKTPWQTQIQWEESHLGNFRRVYP 401
L T+ A+T T+D+K E Q+Q W + + ++ YP
Sbjct: 239 LATSLLAQTETVDKKHHETLMKQSQ-SWSQKAVDSYYFAYP 278
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 27.1 bits (57), Expect = 7.9
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 299 LDHKLHPYILEVNHSPSFHTDTQLDREVKENLLTDT---FTMLNIWQCDKKRVLEEDRKR 355
L+HK+ Y+ E+N S + + E E+ ++ ++ + K +D K
Sbjct: 101 LEHKISDYVQEINSLNSQLQIQKSNPEKHEDAVSQNRLRGSLDTVSSPSKTHKANKDEKA 160
Query: 356 IRDRLLQTNKYAETTTIDEKDREKTPWQTQIQWEESHLGNFR 397
R L+ N + EKD E Q+ + +ES L F+
Sbjct: 161 TRLHLIIANL---KKALKEKDAEVLNLQSHVSSKESELDRFK 199
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.133 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,913,744
Number of Sequences: 5004
Number of extensions: 126635
Number of successful extensions: 332
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 9
length of query: 636
length of database: 2,362,478
effective HSP length: 77
effective length of query: 559
effective length of database: 1,977,170
effective search space: 1105238030
effective search space used: 1105238030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
- SilkBase 1999-2023 -