Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001426-TA|BGIBMGA001426-PA|IPR004344|Tubulin-tyrosine
ligase
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0555 + 4132630-4132923,4133514-4133771,4134125-4134249,413... 44 3e-04
02_05_0528 - 29782382-29782864,29782994-29783092,29783319-297833... 31 2.1
11_04_0314 - 16277292-16277927,16278385-16278514,16278934-162792... 31 2.8
06_01_0738 + 5458182-5458374,5460512-5461766,5461861-5462053,546... 30 4.9
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 29 8.5
05_06_0136 + 25928152-25928659,25928767-25928899,25928987-259290... 29 8.5
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075... 29 8.5
02_01_0344 + 2467191-2468282 29 8.5
>03_01_0555 +
4132630-4132923,4133514-4133771,4134125-4134249,
4134789-4134990,4135172-4135297,4135404-4135660,
4135968-4136075,4136142-4136310,4136378-4136543,
4136967-4136998,4137256-4137579,4137683-4137757,
4138093-4138162,4138228-4138385,4138872-4139021
Length = 837
Score = 44.4 bits (100), Expect = 3e-04
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 23/167 (13%)
Query: 150 ICQVYLSKPFLVDGYKFDIRVYTLITSCDPLRIFVYNEGLVRFATSRYADPNANNTTNVF 209
ICQ Y+ P L G KFD+R + S PL IF+ + VR A ++Y T+ F
Sbjct: 648 ICQKYIECPALFQGRKFDLRYIVFVRSICPLEIFLSDVFWVRLANNQY----TLEKTSFF 703
Query: 210 MHLTNYALNKHSRTYVYDSEAGSKRKISTLNKILLSQGVDLDKLWHSIDEVIVKTIISAW 269
+ T++ + + I +N + + V + H + + + I
Sbjct: 704 EYETHFTVMNY---------------IGRMNHMNTPEFVKEFEKEHQVKWLEIHGRIR-- 746
Query: 270 PILKHSYHACFPSHDMVHACFE--ILGFDILLDHKLHPYILEVNHSP 314
+++ + + H + F I G D++LD+K +P ILEV + P
Sbjct: 747 DMIRCVFESATAVHPEMQNPFSRAIYGVDVMLDNKFNPKILEVTYCP 793
>02_05_0528 -
29782382-29782864,29782994-29783092,29783319-29783387,
29783781-29783888,29783965-29784274,29784772-29784812,
29784886-29784942,29785290-29785448,29785587-29785655,
29785728-29785877,29785967-29786098,29786347-29786433,
29786516-29786686,29786760-29786960,29787348-29787416,
29787510-29787618,29787887-29788005,29788676-29788780,
29789377-29789755,29790022-29790150,29790223-29790402,
29791310-29791469,29791604-29791744,29791832-29792021,
29792100-29792161,29792879-29793107
Length = 1335
Score = 31.5 bits (68), Expect = 2.1
Identities = 20/101 (19%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 193 ATSRYADPNANNTTN--VFMHLTNYALNKHSRTYVYDSEAGSKRKISTLNKILLSQGVDL 250
A+S+ P ++ T+ ++ ++ +A +K+ D++ G+KR ++ L + G+ +
Sbjct: 841 ASSKNIVPTFSHLTSDGIWSNIKEFAKHKYLFEVTDDAKTGAKR-VAVLRNLCQKVGITI 899
Query: 251 DKLWHSIDEVIV---KTIISAWPILKHSYHACFPSHDMVHA 288
+ +D I++ P++KHS C + +++ A
Sbjct: 900 ASRKYDLDAAAPFQPSDILNLQPVVKHSVPVCTDARNLMEA 940
>11_04_0314 -
16277292-16277927,16278385-16278514,16278934-16279217,
16279308-16279431,16280442-16280530,16280630-16280706,
16280790-16280922,16282131-16282211,16282372-16282539
Length = 573
Score = 31.1 bits (67), Expect = 2.8
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 229 EAGSKRKISTLNKILLSQGVDLDKLWHSID 258
E S+ K+ TL +LL + VD++KLW + D
Sbjct: 83 ELDSQFKVLTLTSVLLLKDVDVNKLWRTAD 112
>06_01_0738 +
5458182-5458374,5460512-5461766,5461861-5462053,
5462151-5462344,5462443-5462601,5462683-5463025
Length = 778
Score = 30.3 bits (65), Expect = 4.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 43 ICLANCRYESIRKVASAFGMREVSEEDAWNFYWTDMSVSVE 83
+C+ + RKV A G E E +++F +TD + SVE
Sbjct: 514 VCILRNSVKDKRKVFEASGRHEFKTEGSYSFLFTDYNCSVE 554
>05_07_0329 -
29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 29.5 bits (63), Expect = 8.5
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 7 KLYGE-DDTSQPTSRAAPV--IPV----DAMRKKKKRKRSQ 40
KL E DDTS PT A PV +P DA+ KK K+K+ +
Sbjct: 215 KLLAEIDDTSPPTEEAEPVEEVPAPDADDALGKKSKKKKKK 255
>05_06_0136 +
25928152-25928659,25928767-25928899,25928987-25929058,
25929150-25929221,25929507-25929670,25929760-25930025,
25930115-25930241,25930599-25930667,25930765-25930957,
25931053-25931299,25931342-25931470,25932367-25932654
Length = 755
Score = 29.5 bits (63), Expect = 8.5
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 373 DEKDREKTPWQTQIQWEESHLGNFRRVYPVGEQYASLFQQPSGSLYT 419
D +DR TPW + W E PV + Y LF+ P+ + T
Sbjct: 7 DPRDRVWTPWDSPSNWTE-----ISTTRPVQQTYDDLFEVPTAVMQT 48
>04_04_0859 +
28805836-28805842,28806405-28806492,28807474-28807558,
28807638-28807763,28807819-28807968,28808497-28808541,
28808612-28808875,28809843-28809887,28810395-28810430,
28812048-28812816,28813063-28813925,28814024-28814182,
28814440-28814558,28815356-28815417,28816677-28816805,
28817395-28817460,28817757-28817890,28818025-28818162,
28818630-28818889,28818996-28819107,28819590-28819675,
28820655-28820735,28822841-28822928,28823222-28823260,
28823847-28823964,28824063-28824130,28824884-28824981,
28825238-28825397,28825691-28825816,28825876-28825945,
28826046-28826449
Length = 1664
Score = 29.5 bits (63), Expect = 8.5
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 206 TNVFMHLTNYALNKHSRTYVYDSEAGSKRKISTLNKILLSQGVDLD--KLWHSIDEVIVK 263
TN H L+KH R Y Y E S L ++ S VD + K+ E IV+
Sbjct: 835 TNSLDHTGLLFLSKHLRKYRYGFEYASLEVKDHLERVDFSDMVDTETMKIKRLRLEFIVR 894
Query: 264 TIISAWPILKHSYHACFPS 282
II + L+ + PS
Sbjct: 895 EIIDQYNTLRKQLNNAIPS 913
>02_01_0344 + 2467191-2468282
Length = 363
Score = 29.5 bits (63), Expect = 8.5
Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 15/176 (8%)
Query: 218 NKHSRTYVYDSEAGSKRKIS--TLNKILLSQGVDLDKLWHSIDEVIVKTIISAWPILKHS 275
NK + Y ++A + ++S TL KI+ + + K WH + + + A+ I KH
Sbjct: 155 NKLLSSSPYYTQANGQAELSNKTLLKIVKKKIEEHPKRWHEV----LSEALWAYRISKHG 210
Query: 276 YHACFPSHDMVHACFEILGFDILLDHKLHPYILEVNHSPSFHTDTQLDREVKENLLTDTF 335
P ++V+ +L ++ L YI + + S + D + ++
Sbjct: 211 ATKVTP-FELVYGQEAVLPVEVNLGSLR--YIKQDDLSSEDYKILMGDN--LDEVIDKRL 265
Query: 336 TMLNIWQCDKKRVLEEDRKRIRDRLLQTNKYAETT--TIDEKDREKTPWQTQIQWE 389
L + +KKRV + RKR++ +L Q T + + RE + W WE
Sbjct: 266 KALEEIEKEKKRVAKAYRKRVKAKLFQVGDLVWKTILPLGTRSRESSKWSP--NWE 319
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.133 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,390,870
Number of Sequences: 37544
Number of extensions: 713116
Number of successful extensions: 1552
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1547
Number of HSP's gapped (non-prelim): 10
length of query: 636
length of database: 14,793,348
effective HSP length: 87
effective length of query: 549
effective length of database: 11,527,020
effective search space: 6328333980
effective search space used: 6328333980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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