GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001426-TA|BGIBMGA001426-PA|IPR004344|Tubulin-tyrosine
ligase
         (636 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    27   1.5  
AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        26   2.7  

>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 306 YILEVNHSPSFHTDTQLDREVKENLLTDTF 335
           Y +  +H     T  +LDREV E ++TD F
Sbjct: 380 YQVVTSHLRGSRTPPELDREVLERIVTDLF 409


>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 321 QLDREVKENLLTDTFTMLNIWQCDKKRVLEEDRKRIRDRLLQTNKYAETTTIDEKDREKT 380
           QL R+ K+ L+ +    L + + + +R  E+DR  +        K A       +DR +T
Sbjct: 261 QLQRQRKQELIAEEQQSLEVIEGEMRRQQEQDRAALEASKEMRRKNALEAIRMAEDR-RT 319

Query: 381 PWQTQIQWEESHLGNFRRVYPVGEQYASLFQQ 412
             + + + E++ L    ++Y  G+Q  + F+Q
Sbjct: 320 RLRRESEIEDALL----QIYCEGQQNIASFKQ 347


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.133    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 634,200
Number of Sequences: 2123
Number of extensions: 26747
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 3
length of query: 636
length of database: 516,269
effective HSP length: 68
effective length of query: 568
effective length of database: 371,905
effective search space: 211242040
effective search space used: 211242040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)