Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001426-TA|BGIBMGA001426-PA|IPR004344|Tubulin-tyrosine
ligase
(636 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ... 49 1e-05
At2g31900.1 68415.m03897 myosin family protein contains Pfam pro... 39 0.012
At3g26920.1 68416.m03368 F-box family protein contains F-box dom... 31 1.8
At5g66600.1 68418.m08395 expressed protein contains Pfam profile... 29 7.1
At5g07860.1 68418.m00904 transferase family protein similar to a... 29 7.1
At4g31410.2 68417.m04457 expressed protein 29 7.1
At4g31410.1 68417.m04456 expressed protein 29 7.1
At3g24630.1 68416.m03093 hypothetical protein 29 7.1
At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catal... 29 9.4
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 29 9.4
At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family pr... 29 9.4
At4g35580.1 68417.m05055 no apical meristem (NAM) family protein... 29 9.4
At3g55310.1 68416.m06143 short-chain dehydrogenase/reductase (SD... 29 9.4
At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:4... 29 9.4
>At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein
contains tubulin-tyrosine ligase family domain,
Pfam:PF03133
Length = 867
Score = 48.8 bits (111), Expect = 1e-05
Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 22/211 (10%)
Query: 118 NKTFIIKPECGSQGRGIYLTKSLKDI---KPSDKLICQVYLSKPFLVDGYKFDIRVYTLI 174
N +I+KP ++ +T +L I + ICQ Y+ P L G KFD+R L+
Sbjct: 644 NNLWILKPWNMARTIDTSITDNLSAIIRMMETGPKICQKYIEHPALFKGNKFDLRYVVLV 703
Query: 175 TSCDPLRIFVYNEGLVRFATSRYADPNANNTTNVFMHLTNYALNKHSRTYVYDSEAGSKR 234
S DPL I++ VR + +P + + F + T++ + + R + A R
Sbjct: 704 RSIDPLEIYLIEIFWVRLSN----NPYSLEKHSFFEYETHFTVMNYGRKLNHKPTAEFVR 759
Query: 235 KISTLNKILLSQGVDLDKLWHSIDEVIVKTIISAWPILKHSYHACFPSHDMVHACFEILG 294
+ + + + +D+ H + +++ + A L H S M G
Sbjct: 760 EFEQEHNV---KWMDI----HEKVKQVIRAVFEA-AALAHPEMQSPKSRAM-------YG 804
Query: 295 FDILLDHKLHPYILEVNHSPSFHTDTQLDRE 325
D++LD P ILEV + P + D E
Sbjct: 805 VDVMLDSSFEPKILEVTYCPDCMRACKYDME 835
>At2g31900.1 68415.m03897 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF01843 DIL
domain, PF00612 IQ calmodulin-binding motif, PF02736
myosin N-terminal SH3-like domain
Length = 1556
Score = 38.7 bits (86), Expect = 0.012
Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 32 KKKKRKRSQITICL---ANCRYESIRKVASAFGMREVSEEDAWNFYWTDMSVSVERAKEM 88
K KK + +C+ R +++R V + + ++++ A W ++ V + +
Sbjct: 1299 KLKKEINPLLNLCIHAPRPTRAKTLRDVTKSIHLTTIAKQQASYVQWQNI---VNKLEHT 1355
Query: 89 KRFQRINHYPGMLEICSFGEALNYSKTRKNKTFIIKPECGSQGRGIYLTKSLKDIK 144
F NH P M+ F + +Y + + +++ EC S G YL L +++
Sbjct: 1356 LTFMAENHVPSMITRKLFHQVFSYINVQLFNSLLLRRECCSVSNGEYLKMGLHELE 1411
>At3g26920.1 68416.m03368 F-box family protein contains F-box domain
Pfam:PF00646
Length = 565
Score = 31.5 bits (68), Expect = 1.8
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 164 YKFDIRVYTLITSCDPL-RIFVYNEGLVRFATSRYADPNANNTT----NVFMHLTNYALN 218
YK+D VY L++ C L + VY L+ T A P+ T N + T Y +N
Sbjct: 432 YKYDDSVYNLLSGCPNLENLVVYRGNLLEVETFTIAVPSLQRLTIYDDNDGEYCTGYVIN 491
Query: 219 KHSRTYV 225
S Y+
Sbjct: 492 APSLKYL 498
>At5g66600.1 68418.m08395 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547; expression
supported by MPSS
Length = 614
Score = 29.5 bits (63), Expect = 7.1
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 11 EDDTSQPTSRAAPVIPVDAMRKKKKRKRSQITICLANCRYESIRKVASAFGMREVSEEDA 70
+DDT T + + D + KK + + + + + SAFG R+ S ED+
Sbjct: 183 DDDTPSKTDQHTVPLLDDNQNQSKKTEIAAVDRDQMDPSFRRSHSQRSAFGSRKASPEDS 242
Query: 71 W 71
W
Sbjct: 243 W 243
>At5g07860.1 68418.m00904 transferase family protein similar to
anthranilate N-hydroxycinnamoyl/benzoyltransferase,
Dianthus caryophyllus [gi:2239091]; contains Pfam
transferase family domain PF002458
Length = 454
Score = 29.5 bits (63), Expect = 7.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 499 DSEEDKNKATRIQSKQPIPEESKPQYVLCSFEPDPIVEKDER 540
+S+ED NK +++ E S P Y L EPD + + ER
Sbjct: 195 NSQEDNNKFLCLKNPPIFREVSGPMYSLPFSEPDESISQSER 236
>At4g31410.2 68417.m04457 expressed protein
Length = 308
Score = 29.5 bits (63), Expect = 7.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 344 DKKRVLEEDRKRIRDRLLQTNKYAETTTIDEKDREKTPWQTQIQWE 389
+KKR EE+R R L+ K+A++ D + E P ++ WE
Sbjct: 124 EKKRCCEEERCRFMGTYLELRKHAQSEHPDSRPSEIDP-ARKLDWE 168
>At4g31410.1 68417.m04456 expressed protein
Length = 308
Score = 29.5 bits (63), Expect = 7.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 344 DKKRVLEEDRKRIRDRLLQTNKYAETTTIDEKDREKTPWQTQIQWE 389
+KKR EE+R R L+ K+A++ D + E P ++ WE
Sbjct: 124 EKKRCCEEERCRFMGTYLELRKHAQSEHPDSRPSEIDP-ARKLDWE 168
>At3g24630.1 68416.m03093 hypothetical protein
Length = 724
Score = 29.5 bits (63), Expect = 7.1
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 346 KRVLEEDRKRIRDRLLQTNKYAETTTIDEKDR 377
K EE RK IR+ L+ N ++TTTI+ K R
Sbjct: 176 KDCYEELRKVIRESFLRQNLVSQTTTIETKKR 207
>At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha
catalytic subunit, putative similar to SP|O48653 DNA
polymerase alpha catalytic subunit (EC 2.7.7.7) {Oryza
sativa}; contains Pfam profiles: PF03175 DNA polymerase
type B, organellar and viral, PF00136 DNA polymerase
family B, PF03104 DNA polymerase family B, exonuclease
domain
Length = 1492
Score = 29.1 bits (62), Expect = 9.4
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 22 APVIPVDAMRKKKKRKRSQITICLANCRYESIRKVASAFGMREVSEEDAWNFYWTDMSVS 81
A V P ++ RKK R++ T+ + + + + VAS+ GM+E SE + +S+
Sbjct: 182 AQVTPDESDRKKHTRRKLPGTVPVTIFKNKKLFSVASSMGMKE-SEPTPSTYEGDSVSMD 240
Query: 82 VERAKE 87
E KE
Sbjct: 241 NELMKE 246
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 29.1 bits (62), Expect = 9.4
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 283 HDMVH-ACFEILGFDILLDH-KLHPYILEVNHSPSFHTDTQLDREVKE-----NLLTDTF 335
HD ++ A EI+ L+++ K L+V S T+ +L+RE +E N +TD
Sbjct: 969 HDKINVASSEIMALTELINNLKNELDSLQVQKS---ETEAELEREKQEKSELSNQITDVQ 1025
Query: 336 TMLNIWQCDKKRVLEEDRKRIRDRLLQTNKYAETTTIDEKDREK 379
L + Q LEE+ K+I + +T T+D K+ ++
Sbjct: 1026 KAL-VEQEAAYNTLEEEHKQINELFKETEATLNKVTVDYKEAQR 1068
>At5g38860.1 68418.m04700 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 298
Score = 29.1 bits (62), Expect = 9.4
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 152 QVYLSKPFLVDGYK-----FDIRVYTLITSCDPLRI---FVYNEGLVRFATSRYADPNAN 203
+V S FL+D Y D V T I P+ ++ E ++F + P +
Sbjct: 134 KVAASSGFLLDTYNSVNPDIDSAVSTKIPEHSPVSAVSSYLRTEPSLQFVQHDFWQPKTS 193
Query: 204 -NTTNVFMHLTNYALNKHSRTYVYDSEAGSKRKISTLNKILLSQGVDLDKLWHSI 257
T N F TN L +T S S+R ++TL + L S GV++ + S+
Sbjct: 194 CGTINCF---TNELLTSDEKTSASLSTVCSQRVLNTLTEALKSSGVNMSETMISV 245
>At4g35580.1 68417.m05055 no apical meristem (NAM) family protein
similar to TIP [Arabidopsis thaliana] GI:9408601;
contains Pfam profile PF02365: No apical meristem (NAM)
protein
Length = 512
Score = 29.1 bits (62), Expect = 9.4
Identities = 14/59 (23%), Positives = 27/59 (45%)
Query: 389 EESHLGNFRRVYPVGEQYASLFQQPSGSLYTGTASSRARGDCTRIQREEFQQSKAKAEA 447
E + V P ++ A+ + + SGSL RARG +++ E F + + ++
Sbjct: 420 EREEVNEGHTVIPEAKEAAAKYSEKSGSLVKPQIKLRARGTIGQVKGERFADDEVQVQS 478
>At3g55310.1 68416.m06143 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 298
Score = 29.1 bits (62), Expect = 9.4
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 535 VEKDERERVNLLAQRDFLIRSYGMLEQARILLDLFDDEENWDFKTGRRKEIWCLWATVSY 594
++K RE ++ + D LI + G+ ++ LDL +DE + F T + W Y
Sbjct: 106 IQKAVREAWDIFGKIDALINNAGIRGNVKLSLDLSEDEWDNVFNTNLKGP----WLVAKY 161
Query: 595 FCL 597
C+
Sbjct: 162 VCV 164
>At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:433663
from (Arabidopsis thaliana)
Length = 1520
Score = 29.1 bits (62), Expect = 9.4
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 90 RFQRINHYPGMLEICSFGEALNYSKTRKNKTFIIKPECGSQGRGIYLTKSLKDIK 144
R R N+ P +L FG+ ++ + + +++ EC S G Y+ L +++
Sbjct: 1324 RTMRANYVPSLLISKVFGQIFSFINVQLFNSLLLRRECCSFSNGEYVKTGLAELE 1378
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.133 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,789,434
Number of Sequences: 28952
Number of extensions: 637857
Number of successful extensions: 1477
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1468
Number of HSP's gapped (non-prelim): 17
length of query: 636
length of database: 12,070,560
effective HSP length: 86
effective length of query: 550
effective length of database: 9,580,688
effective search space: 5269378400
effective search space used: 5269378400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
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