Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001425-TA|BGIBMGA001425-PA|IPR001739|Methyl-CpG binding
         (249 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY563109-1|AAS99587.1|   46|Tribolium castaneum aristaless protein.    23   2.9  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   8.9  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   8.9  

>AY563109-1|AAS99587.1|   46|Tribolium castaneum aristaless
          protein.
          Length = 46

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 16 PKGWQREEVVRKTGLSAGKVDVYY 39
          P  + REE+  K GL+  ++ V++
Sbjct: 22 PDVFTREELAMKIGLTEARIQVWF 45


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 158 GTTSLPKYIKSLGPYTSDA 176
           G T LP+  K   PY S+A
Sbjct: 258 GQTKLPQQPKLFKPYKSEA 276


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 91  RGVRNDASLVPPIRQTASIFKQPVTVY 117
           +G   +  L P    +A  F+QP+ +Y
Sbjct: 246 QGFNMERLLAPSTEVSAPFFRQPLDLY 272


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,922
Number of Sequences: 317
Number of extensions: 2221
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 249
length of database: 114,650
effective HSP length: 55
effective length of query: 194
effective length of database: 97,215
effective search space: 18859710
effective search space used: 18859710
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)