Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001425-TA|BGIBMGA001425-PA|IPR001739|Methyl-CpG binding
(249 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35452| Best HMM Match : UK (HMM E-Value=5.7) 130 1e-30
SB_36862| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 8e-08
SB_14567| Best HMM Match : MFS_1 (HMM E-Value=1.1) 51 8e-07
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 36 0.042
SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_21452| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0) 28 8.4
SB_58602| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5) 28 8.4
SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_35452| Best HMM Match : UK (HMM E-Value=5.7)
Length = 223
Score = 130 bits (314), Expect = 1e-30
Identities = 82/212 (38%), Positives = 122/212 (57%), Gaps = 12/212 (5%)
Query: 42 PTGKKFRSKPELVRYLGDSVDLSCFDFQQGQINTMLLCKAKKARAQFDYRGVRNDASLVP 101
P GKK RSKP+L + LG VDL+ FDF+ G ++K+ R+Q ++ N A
Sbjct: 2 PDGKKCRSKPQLEKELG-GVDLTDFDFRSGTFCR----RSKRQRSQPNFSRDLNGAIPNS 56
Query: 102 PIRQ-TASIFKQPVTVY---KTQDSKVKTDLKHGTQEKPKQLFWEKRLEGLTACDANGV- 156
P+RQ T S KQPV+ Y + + KV+ +EKPKQLFWEKR++GLTA +A
Sbjct: 57 PVRQSTKSFSKQPVSYYPGRQAKKQKVEPIKTKIDKEKPKQLFWEKRIQGLTAVNAEDER 116
Query: 157 -IGTTSLPKYIKSLGPYTSDATTIQSLATALHVSSQPITGQIGSKQAIKDNPGVFLNPEQ 215
+ +L K + +GP + + +L T +H S I GQ S A++ +P +++N +Q
Sbjct: 117 KLDAFNLGKTFRVIGPGMDEKALVHALVTNIHTKSS-IKGQSMSLVALEKHPEIWINVDQ 175
Query: 216 PLIAAVTITKEDVRRQEERVKRARQRLRQALS 247
P A IT D++ QEERV R RQ+L +A++
Sbjct: 176 PPCAPFVITDADIKAQEERVSRQRQKLAEAIA 207
>SB_36862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 54.4 bits (125), Expect = 8e-08
Identities = 24/43 (55%), Positives = 31/43 (72%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
LPKGW++ V RK+G + G VDVY + P G+KFRS EL R+L
Sbjct: 8 LPKGWKKVCVTRKSGKTKGHVDVYIHDPLGRKFRSLAELKRHL 50
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVD-LSCFDF 68
+PKGW R E VRK G + G+VDV +P GK+FRS+ +L +L + LS DF
Sbjct: 159 VPKGWTRTEYVRKGGRTQGRVDVTVINPEGKQFRSRVQLSEFLKEQQSKLSVDDF 213
Score = 48.8 bits (111), Expect = 4e-06
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDS-VDLSCFDFQQGQI 73
+P GW + R G + G DVY P G+KFRSK EL R+L S DL+ DF Q
Sbjct: 350 VPTGWVKIVTQRSKGKTKGTYDVYIVDPDGRKFRSKAELKRFLDKSQSDLTIEDF-DFQH 408
Query: 74 NTMLLCKAKK 83
M++ KK
Sbjct: 409 KKMVITSNKK 418
>SB_14567| Best HMM Match : MFS_1 (HMM E-Value=1.1)
Length = 600
Score = 51.2 bits (117), Expect = 8e-07
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 9 RSDCSALPKGWQREEVVRKTGLSAGKVDVYYY 40
R C +LPKGW RE V+RK+G+SAG+ DVYYY
Sbjct: 568 RVTCPSLPKGWLREIVLRKSGVSAGRSDVYYY 599
>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 15 LPKGWQREEVVRKTGLSA---GKVDVYYYSPTGKKFRSKPELVRYL 57
L GW+R+ +R + + DV+Y++P GKK R+ PE+ RYL
Sbjct: 492 LELGWKRQTRLRPLVAATPGGSRGDVFYFAPCGKKLRTYPEVARYL 537
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 35.5 bits (78), Expect = 0.042
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 184 TALHVSSQPITGQIGSKQAIKDNPGVFLNPEQPLIAAVTITKEDVRRQEERVKRARQRLR 243
T HV P+ G + +++ D P P P A ++T ED+ R+ +++A + L+
Sbjct: 445 TTEHVRLTPVPGIVVKIESMVDKPQFVKLPSPPNTADPSLTHEDISREINNIEKADKELK 504
Query: 244 QA 245
+A
Sbjct: 505 RA 506
>SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1074
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 149 TACDANGVIGTTSLPKYIKSLGPYTSDATTIQSLATALHVSSQPITG 195
TA A GV+G P + P +++ T ++ + HV+ P TG
Sbjct: 253 TASSAGGVVGCAQTPSTVAIASPQSANTATSTTVPVSSHVT--PATG 297
>SB_21452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLG 58
D + P + REE+ K GL+ ++ V++ + K+R + +L Y G
Sbjct: 83 DKAPYPDVFAREELAAKLGLTEARIQVWFQNRRA-KWRKREKLCGYAG 129
>SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)
Length = 1649
Score = 27.9 bits (59), Expect = 8.4
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 17/125 (13%)
Query: 121 DSKVKTDLKHGTQEKPKQLFWEKRLEGLTACDANGVIGTTSLPKYIK----SLGPYTSDA 176
D+K+K + K GT+ + LF +K L+ + N + TSLP+ + SL P+ S+
Sbjct: 92 DTKIKMEEK-GTKVA-RTLFSKKNLQNESD---NTSLEVTSLPELEENSELSLMPFASEN 146
Query: 177 TTIQSLATALHVSSQPITGQIGSKQAIKDNPGVFLNPEQPLIAAVTITKEDVRRQEERVK 236
TT ++ + P + S Q +K + P+ + ITK +V+R+++R +
Sbjct: 147 TT-KTTSNRSEREPAPAVSPLVSSQEVKSFHAL---PQ----STPKITKINVKRRDKRHR 198
Query: 237 RARQR 241
R R +
Sbjct: 199 RGRTK 203
>SB_58602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 142 EKRLEG-LTACDANGVIGTTSLPKYIKSLGPYTSDATTIQSLATALHVSSQP 192
+KR EG L + + +L KY+ S+ D +++LAT LHV S P
Sbjct: 224 KKREEGILEGLEIPKITPYKNLMKYVNSID--IGDVRDLKNLATELHVESAP 273
>SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5)
Length = 565
Score = 27.9 bits (59), Expect = 8.4
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 17/125 (13%)
Query: 121 DSKVKTDLKHGTQEKPKQLFWEKRLEGLTACDANGVIGTTSLPKYIK----SLGPYTSDA 176
D+K+K + K GT+ + LF +K L+ + N + TSLP+ + SL P+ S+
Sbjct: 233 DTKIKMEEK-GTKVA-RTLFSKKNLQNESD---NTSLEVTSLPELEENSELSLMPFASEN 287
Query: 177 TTIQSLATALHVSSQPITGQIGSKQAIKDNPGVFLNPEQPLIAAVTITKEDVRRQEERVK 236
TT ++ + P + S Q +K + P+ + ITK +V+R+++R +
Sbjct: 288 TT-KTTSNRSEREPAPAVSPLVSSQEVKSFHAL---PQ----STPKITKINVKRRDKRHR 339
Query: 237 RARQR 241
R R +
Sbjct: 340 RGRTK 344
>SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 738
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 80 KAKKARAQFDYRGVRNDASLVPPIRQTASIFKQPVTVYKTQDSKV-KTDLKHGTQEKPKQ 138
K + + + Y + + L R+ ++ VT T++S + GT EKP+Q
Sbjct: 393 KISQTKGKEQYEDLSENLFLSVETREKGETSRKRVTKKGTENSADDSSSAPKGTSEKPRQ 452
Query: 139 LFWEKRLEGLTAC-DANGVI 157
L K E T C D++ V+
Sbjct: 453 LKDRKDSEQKTGCPDSDDVL 472
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.131 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,017,190
Number of Sequences: 59808
Number of extensions: 322400
Number of successful extensions: 941
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 931
Number of HSP's gapped (non-prelim): 14
length of query: 249
length of database: 16,821,457
effective HSP length: 80
effective length of query: 169
effective length of database: 12,036,817
effective search space: 2034222073
effective search space used: 2034222073
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
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