Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001425-TA|BGIBMGA001425-PA|IPR001739|Methyl-CpG binding
(249 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59380.1 68418.m07441 methyl-CpG-binding domain-containing pr... 56 2e-08
At3g46580.1 68416.m05056 methyl-CpG-binding domain-containing pr... 52 5e-07
At5g35330.2 68418.m04188 methyl-CpG-binding domain-containing pr... 45 6e-05
At5g35330.1 68418.m04187 methyl-CpG-binding domain-containing pr... 45 6e-05
At3g63030.1 68416.m07080 methyl-CpG-binding domain-containing pr... 43 2e-04
At4g22745.1 68417.m03282 methyl-CpG-binding domain-containing pr... 40 0.002
At5g59800.1 68418.m07497 methyl-CpG-binding domain-containing pr... 40 0.002
At5g35338.2 68418.m04194 methyl-CpG-binding domain-containing pr... 36 0.026
At4g39680.1 68417.m05614 SAP domain-containing protein contains ... 34 0.079
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 30 1.3
At4g00416.1 68417.m00056 methyl-CpG-binding domain-containing pr... 30 1.3
At3g15790.1 68416.m01999 methyl-CpG-binding domain-containing pr... 30 1.7
At5g47580.1 68418.m05873 expressed protein strong similarity to ... 29 2.2
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ... 29 3.0
At1g70070.1 68414.m08062 DEAD/DEAH box helicase, putative simila... 29 3.9
At3g28030.1 68416.m03499 UV hypersensitive protein (UVH3) / DNA-... 28 5.2
At3g14980.1 68416.m01894 PHD finger transcription factor, putati... 28 5.2
At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing pr... 28 5.2
>At5g59380.1 68418.m07441 methyl-CpG-binding domain-containing
protein similar to testis specific methyl-CpG binding
protein MBD2 [Homo sapiens] GI:3800801; contains Pfam
profile PF01429: Methyl-CpG binding domain
Length = 225
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/44 (54%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYYYSP-TGKKFRSKPELVRYL 57
LP GW+ E+ +R +G +AG VD YYY P TG+KFRS+ E++ YL
Sbjct: 81 LPPGWRVEDKIRTSGATAGSVDKYYYEPNTGRKFRSRTEVLYYL 124
>At3g46580.1 68416.m05056 methyl-CpG-binding domain-containing
protein weak similarity to SP|P51608 Methyl-CpG-binding
protein 2 (MeCP-2 protein) (MeCP2) {Homo sapiens};
contains Pfam profile PF01429: Methyl-CpG binding
domain
Length = 182
Score = 51.6 bits (118), Expect = 5e-07
Identities = 29/58 (50%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 4 SIERKRS---DCSALPKGWQREEVVRKTGLSAGKVDVYYYSP-TGKKFRSKPELVRYL 57
S RKR+ D + LP W+ E VR +G AG VD +YY P TG+KFRSK E++ YL
Sbjct: 21 SKSRKRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVLYYL 78
>At5g35330.2 68418.m04188 methyl-CpG-binding domain-containing
protein similar to methyl-CpG binding protein MBD4 [Mus
musculus] GI:3800807; contains Pfam profile PF01429:
Methyl-CpG binding domain
Length = 272
Score = 44.8 bits (101), Expect = 6e-05
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 9 RSDCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL-------GDSV 61
+ + S P GWQR +R G DVYY +P+GKK RS E+ +YL G+ V
Sbjct: 122 KPNISRPPAGWQRLLRIRGEG-GTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEYIGEGV 180
Query: 62 DLSCFDFQ 69
LS F FQ
Sbjct: 181 KLSQFSFQ 188
>At5g35330.1 68418.m04187 methyl-CpG-binding domain-containing
protein similar to methyl-CpG binding protein MBD4 [Mus
musculus] GI:3800807; contains Pfam profile PF01429:
Methyl-CpG binding domain
Length = 272
Score = 44.8 bits (101), Expect = 6e-05
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 9 RSDCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL-------GDSV 61
+ + S P GWQR +R G DVYY +P+GKK RS E+ +YL G+ V
Sbjct: 122 KPNISRPPAGWQRLLRIRGEG-GTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEYIGEGV 180
Query: 62 DLSCFDFQ 69
LS F FQ
Sbjct: 181 KLSQFSFQ 188
>At3g63030.1 68416.m07080 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 186
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 16 PKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
PKG++R V+RK K+D YY++PTGKK RS+ E+ ++
Sbjct: 94 PKGFKRSLVLRK---DYSKMDTYYFTPTGKKLRSRNEIAAFV 132
>At4g22745.1 68417.m03282 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 204
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 16 PKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVD 62
P+G++R ++RK K+D YY +PTGKK +S+ E+ ++ + D
Sbjct: 121 PRGFKRSLILRK---DYSKMDAYYITPTGKKLKSRNEIAAFIDANQD 164
>At5g59800.1 68418.m07497 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 306
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYYYS-PTGKKFRSKPELVRYLGDS 60
LP+GW EEV RK ++ +D YY TGK+FRS + RYL +S
Sbjct: 116 LPRGWSVEEVPRK---NSHYIDKYYVERKTGKRFRSLVSVERYLRES 159
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYYYSP-TGKKFRSKPELVRYL 57
LP GW EE R+ S+ +D Y P TG KFRS + RYL
Sbjct: 182 LPDGWIVEEKPRR---SSSHIDRSYIEPGTGNKFRSMAAVERYL 222
>At5g35338.2 68418.m04194 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429:Methyl-CpG binding
domain
Length = 155
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
+P GW R +R S DVYY+ P+G++ RS E+ +L
Sbjct: 63 IPTGWSRSVHIRSE--STKFADVYYFPPSGERLRSSAEVQSFL 103
>At4g39680.1 68417.m05614 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 633
Score = 34.3 bits (75), Expect = 0.079
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 50 KPELVRYLGDSVDLSCFDFQQGQINTMLLCKAKKARAQ---FDYR-GVRNDASLVPPIRQ 105
K ELVR L ++ L + +IN+ + A+KA + F G RN + V P+
Sbjct: 37 KEELVRRLDEA--LRAEQEESERINSATVAAAEKANQEPQMFPVTVGDRNQTTPVTPVEA 94
Query: 106 TASIFKQPVTVYKTQD---SKVKTDLKHGTQEKPKQLFWEKRLEGL 148
S PVT KT + +K+ T+ G + P +F E + +
Sbjct: 95 AFSTETTPVTAEKTPEPTQTKITTEASAGVETTPAPVFSEPEVNAV 140
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 118 KTQDSKVKTDLKHGTQEKPKQLFWEKR 144
++ DSKV TDL + +KPK+L EK+
Sbjct: 290 ESSDSKVVTDLNIASSKKPKELLKEKK 316
>At4g00416.1 68417.m00056 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 163
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 16 PKGWQREEVVRKTGLSAGKVDVYYYS--PTGKKFRSKPELVRYLGDSVDLSCFDFQQGQI 73
P+G +R VVR + KVDVYY S P K+F+S E+ ++ D + ++
Sbjct: 76 PQGLKRVLVVRTNCV---KVDVYYESLAPRRKRFKSIKEVATFIEDKEEFKDMTLEEVSF 132
Query: 74 NTMLLCKAKK 83
K KK
Sbjct: 133 AAPKRLKLKK 142
>At3g15790.1 68416.m01999 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 254
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 16 PKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
P W++ K G S K +V + +PTG++ ++ +L +YL
Sbjct: 15 PSSWKKLFYPNKVG-SVKKTEVVFVAPTGEEISNRKQLEQYL 55
>At5g47580.1 68418.m05873 expressed protein strong similarity to
unknown protein (pir||E71441)
Length = 748
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 147 GLTACDANGVIGTTSLPKYIKSLGPYTSDATTIQSLATA 185
G+ CDA+G + K + S+G Y + A+ I LA A
Sbjct: 2 GILGCDAHGDLNDAEFSKPLPSIGIYVAVASLICGLAMA 40
>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
binding domain-containing protein contains Pfam profiles
PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
binding domain
Length = 2176
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSV--DLSCFDFQQGQ 72
L GW+ E + L+ ++ Y +P GK F S E+ YLG ++ + SC D +
Sbjct: 268 LEDGWRVEF---RQPLNGYQLCAVYCAPNGKTFSSIQEVACYLGLAINGNYSCMDAEIRN 324
Query: 73 INTML 77
N++L
Sbjct: 325 ENSLL 329
>At1g70070.1 68414.m08062 DEAD/DEAH box helicase, putative similar
to SP|P35207 Antiviral protein SKI2 {Saccharomyces
cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 1171
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 167 KSLGPYTSDATTIQSLATALHVSSQ-PITGQIGSKQAIKDNPGVFLNPEQPLIAAVTITK 225
KS G Y S T+ + + ++ I S +AI L+ +T+ K
Sbjct: 653 KSFGNYVSSNVTVAAKQELAEIDNKIEILSSEISDEAIDKKSRKLLSARD--YKEITVLK 710
Query: 226 EDVRRQEERVKRARQRLRQAL 246
E++R EE+ KRA QR R L
Sbjct: 711 EELR--EEKRKRAEQRRRMEL 729
>At3g28030.1 68416.m03499 UV hypersensitive protein (UVH3) /
DNA-repair protein, putative identical to UV
hypersensitive protein [Arabidopsis thaliana]
gi|13649704|gb|AAK37472; similar to Swiss-Prot:P14629
DNA-repair protein complementing XP-G cells homolog
(Xeroderma pigmentosum group G complementing protein
homolog) [Xenopus laevis]
Length = 1479
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 47 FRSKPELVRYLGDSVDLSCFDFQQGQINTMLLCKAKKARAQFDYRGVRNDASLVPPIRQ 105
F S+ + YL VDLS F G+ + +L K +F++ G + D L+P +++
Sbjct: 1116 FPSEAVISAYLNPQVDLSTEKFSWGKPDLSVL--RKLCWEKFNWNGKKTDELLLPVLKE 1172
>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
contains Pfam profile: PF00628 PHD-finger
Length = 1189
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 25 VRKTGLSAGK--VDVYYYSPTGKKFRSKPELVRYLG 58
+ K SAG+ VD +Y SP G+KFR + LG
Sbjct: 258 IEKRERSAGRKHVDTFYISPEGRKFREFGSAWKALG 293
>At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 384
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 16 PKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
P W++ ++ G + K ++ + +PTG++ S+ +L +YL
Sbjct: 15 PASWKKLFYPKRAG-TPRKTEIVFVAPTGEEISSRKQLEQYL 55
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.131 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,586,392
Number of Sequences: 28952
Number of extensions: 224047
Number of successful extensions: 614
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 598
Number of HSP's gapped (non-prelim): 20
length of query: 249
length of database: 12,070,560
effective HSP length: 79
effective length of query: 170
effective length of database: 9,783,352
effective search space: 1663169840
effective search space used: 1663169840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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