Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001425-TA|BGIBMGA001425-PA|IPR001739|Methyl-CpG binding
(249 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 29 0.48
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.5
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 27 2.6
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p... 27 2.6
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 27 2.6
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha... 26 4.5
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 25 7.8
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 25 7.8
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 25 7.8
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 29.5 bits (63), Expect = 0.48
Identities = 24/90 (26%), Positives = 40/90 (44%)
Query: 157 IGTTSLPKYIKSLGPYTSDATTIQSLATALHVSSQPITGQIGSKQAIKDNPGVFLNPEQP 216
+ TT+L KY L + + T + L H+ S+ Q K+ GVF + QP
Sbjct: 282 VETTNLKKYSSFLALKEAVSMTSEQLRVLEHLLSECSHEINVLSQQSKNFNGVFESSYQP 341
Query: 217 LIAAVTITKEDVRRQEERVKRARQRLRQAL 246
LI + ++ E+R+ A+ L +L
Sbjct: 342 LINDLDHQISVMQNDEKRINNAKTELSLSL 371
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 27.9 bits (59), Expect = 1.5
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Query: 74 NTMLLCKAKKARAQFDYRGVRNDASLVPPIRQTASIFKQPVTVYKTQDSKVKTDLKHGTQ 133
N +L+CKAKK + + L+ + + +S+ + +T K ++ K
Sbjct: 34 NKLLICKAKKENLEKKLAYQMMYSKLLKSLPKLSSLEENKLTKLKAPIEDMENTKKE--L 91
Query: 134 EKPKQLFWEKRLEGLTACDANGVIGTTSLPKYIKSLGPYTS 174
E+ ++ E L L + GT SL I +GP S
Sbjct: 92 EEIRKQSTETELRYLKSLSNTLSFGTLSLSNEINKVGPSAS 132
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 68 FQQGQINTMLLCKAKKARAQFDYRGVRNDASLVPP 102
F QG+ N ML + +FD+RGV+ PP
Sbjct: 554 FYQGRTNIMLYTERAHHFRRFDFRGVKAVVMYGPP 588
>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 27.1 bits (57), Expect = 2.6
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
Query: 52 ELVRYLGDSVDLSCFDFQQGQINTMLLCKAKKARAQFDYRGVRNDASLVPPIRQTASIFK 111
E+ L +S F +G +N L Q +Y +R P + + + +
Sbjct: 54 EVCEMLKESSLFQLFRKHKGYLNVTDLVLPLWCEVQHEYYLLRRIKKKTPKMERGIKLHQ 113
Query: 112 QPVTVYKTQDSKVKTDLKHGTQEKPKQLFWEKRLEGLTACDANGV 156
+ Y+T + L ++E+P L ++LEG+ NG+
Sbjct: 114 --ILEYETSPPSERRVLDRTSKEEPWALRLLRQLEGIMLLQKNGI 156
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 173 TSDATTIQSLATALHVSSQP-ITGQIGSKQAIKDNPGVFLNPEQPLIA----AVTITKED 227
T T + S++ A ++SS+ I+ SK + + +P F+N +P++A VT + E
Sbjct: 643 TVSDTAVPSMSFANNISSRSVISAATDSKPSTRTSPP-FVNNTKPIVAKSPVTVTASSET 701
Query: 228 VRRQEERVKRARQRL 242
++ ++ K+A R+
Sbjct: 702 NKKSQKINKKASPRV 716
>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 321
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 22 EEVVRKTGLSAGKVDVYYYS 41
E+V R+ GLS GKV V YS
Sbjct: 19 EKVARRIGLSLGKVAVVQYS 38
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 175 DATTIQSLATALHVSSQPITGQIGSKQAIKDNPGVFLN 212
D TT++S S +T Q+ K AI D VF+N
Sbjct: 472 DVTTVKSSICPKLYHSFSVTNQLDVKVAILDTFNVFIN 509
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 118 KTQDSKVKTDLKHGTQEKPKQLF 140
K DS++ T +K+G QEK + F
Sbjct: 4 KALDSRIPTLIKNGCQEKQRSFF 26
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.4 bits (53), Expect = 7.8
Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 121 DSKVKTDLKHGTQEKPKQLFWEKRLEGLTACDANGVIGTTSLPKYIKSLGPYTSDATTIQ 180
D ++ + T E+ Q+ ++ + +T + +L K SL Y +++
Sbjct: 105 DVFLRIPAREATLEELLQVHSQEMYDRVTNTEKMSHEDLANLEKISDSLY-YNNESAFCA 163
Query: 181 SLA--TALHVSSQPITGQIGSKQAIKDNPGVFLNPEQP----LIAAVTIT-KEDVRRQEE 233
LA +A+ + +TGQ+ + A+ PG P +P L V++T + ++R +
Sbjct: 164 RLACGSAIETCTAVVTGQVKNAFAVVRPPGHHAEPHKPGGFCLFNNVSVTARSMLQRFPD 223
Query: 234 RVKR 237
++KR
Sbjct: 224 KIKR 227
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.131 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,071,635
Number of Sequences: 5004
Number of extensions: 42860
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 9
length of query: 249
length of database: 2,362,478
effective HSP length: 71
effective length of query: 178
effective length of database: 2,007,194
effective search space: 357280532
effective search space used: 357280532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)
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