Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001425-TA|BGIBMGA001425-PA|IPR001739|Methyl-CpG binding
(249 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1293 + 29077525-29078120,29078592-29078645,29078819-290789... 49 3e-06
09_04_0597 - 18859601-18859818,18860914-18861083,18861250-188613... 44 9e-05
05_04_0266 - 19558769-19559275,19560852-19560933,19561354-195618... 35 0.054
04_03_0128 - 11530618-11530838,11532683-11532809,11533746-115338... 33 0.29
04_03_0091 - 11043023-11043090,11043458-11043566,11044431-110445... 31 1.2
04_01_0478 - 6257038-6257198,6258225-6258433,6259648-6259692,625... 31 1.2
07_03_1795 + 29603694-29605208,29605423-29605649,29605739-296060... 30 2.0
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612... 29 2.7
12_02_1147 - 26459481-26460124,26460241-26460382,26461658-264616... 29 3.6
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 29 4.7
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 4.7
11_06_0291 + 22008412-22012284 28 6.2
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 28 6.2
11_07_0014 + 27379941-27379974,27381975-27382033,27382561-273827... 28 8.2
09_02_0267 - 6485428-6485895,6488255-6488303,6488466-6488469,648... 28 8.2
06_03_0390 - 20280355-20281178,20281392-20281565,20281613-20281847 28 8.2
05_05_0006 + 21450739-21451434 28 8.2
>06_03_1293 +
29077525-29078120,29078592-29078645,29078819-29078970,
29079362-29079639
Length = 359
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 9 RSDCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDS 60
++ S P GW RE +R G S DVYY SPTGKK RS E+ RYL ++
Sbjct: 172 KASISQTPPGWDREVRIRGEGCSKF-ADVYYTSPTGKKLRSLVEVGRYLAEN 222
>09_04_0597 -
18859601-18859818,18860914-18861083,18861250-18861303,
18862759-18863284,18864465-18864663,18866787-18866852,
18866999-18867300,18867394-18867634,18867716-18867973,
18868076-18868207
Length = 721
Score = 44.4 bits (100), Expect = 9e-05
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 16 PKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVD 62
P GW+R+ +R G DVYY SPTG+K RS E+ RYL ++ D
Sbjct: 555 PPGWERQIRIRGEG-GTKFADVYYTSPTGRKLRSLVEIDRYLLENPD 600
>05_04_0266 -
19558769-19559275,19560852-19560933,19561354-19561865,
19563113-19563124
Length = 370
Score = 35.1 bits (77), Expect = 0.054
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 34 KVDVYYYSPTGKKFRSKPELVRYLGD------SVDLSCFDFQQGQINTMLLCKAKK---A 84
K+D YY P GK+ + KP++ R+L + ++ LS F+F +I + + K A
Sbjct: 94 KMDAYYVLPNGKRAKGKPDIDRFLKENPEYAATLPLSSFNFSTPKIVKETVSDSAKWVMA 153
Query: 85 RAQFDYRGVRNDASLVPPIRQTASIFKQPVTVYKTQDSKVK 125
+++ + + ++ DA VP + K V + K + ++
Sbjct: 154 KSEREEQCMQLDAKEVPSSSSKKRVCKMRVKLGKCPEHNLQ 194
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 16 PKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
P G +R ++R K+D YY P GK+ R E+ ++L
Sbjct: 281 PAGTERLVIMRG---DLSKMDTYYVMPNGKRVRCTAEVDKFL 319
>04_03_0128 -
11530618-11530838,11532683-11532809,11533746-11533892,
11533981-11534082,11534207-11534332,11535507-11535584,
11535780-11535827,11536005-11536193
Length = 345
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYY-YSPTGKKFRSKPELVRYLGDSVDLSCFDFQQGQI 73
LPKGW E VR G + K+ +Y Y P G + SK +++ Y+ S +++ FD G+
Sbjct: 85 LPKGWIIE--VRAGGKNMNKMYKFYVYPPAGVRLFSKEDVLLYINKS-EITGFD-TNGEC 140
Query: 74 NT 75
+T
Sbjct: 141 DT 142
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 14 ALPKGWQREEVVRKTGLSAGKVDVYYYSPTGK-KFRSKPELVRYL 57
+LP+GW +E V RKT + D Y+ P FR++ + Y+
Sbjct: 158 SLPEGWVKEVVFRKTKTGVIRKDPYFTDPVNNYSFRTRKSAMLYV 202
>04_03_0091 -
11043023-11043090,11043458-11043566,11044431-11044577,
11044678-11044776,11044857-11044982,11045448-11045582,
11046391-11046468,11046553-11046678,11046828-11046968
Length = 342
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYYYSPTGKK-FRSKPELVRYL 57
LP+GW +E + RK K D YY P + FR+ ++ YL
Sbjct: 214 LPEGWVKEIIFRKCNDGIRK-DPYYTDPVSRHVFRTLKSVINYL 256
>04_01_0478 -
6257038-6257198,6258225-6258433,6259648-6259692,
6259903-6259946,6260017-6260087,6260395-6260506,
6260544-6260654,6262694-6262741,6262849-6263028
Length = 326
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 1 MNISIERKRSDCSA-LPKGWQREEVVRKTGLSAGKVDVYYYSP 42
M IS C+ LP+GW +E V RKT S + D +Y P
Sbjct: 137 MKISEFDTDGQCNTRLPQGWVKEVVFRKTNTSRIRRDQHYTDP 179
>07_03_1795 +
29603694-29605208,29605423-29605649,29605739-29606071,
29606229-29606475,29606948-29607076,29607161-29607376,
29607454-29607577,29608377-29608612
Length = 1008
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 201 QAIKDNPGVFLNPEQPLIAAVTITKEDVRRQEERVKR 237
Q IK++P EQ L+ ++KEDV++ E+V R
Sbjct: 505 QVIKNHPSSLKLYEQKLLGTGEVSKEDVQKIHEKVNR 541
>07_03_1554 +
27659995-27660093,27661084-27661120,27661204-27661280,
27662272-27662342,27662512-27662590,27662726-27662828,
27662963-27663082,27663180-27663257,27663416-27663471,
27663588-27663657,27664179-27664266,27664503-27664800,
27664943-27665158,27665521-27665841,27666054-27666103,
27666493-27666553,27666633-27666716,27666926-27667039,
27667134-27667300,27667559-27667628,27668328-27668507,
27668619-27668807
Length = 875
Score = 29.5 bits (63), Expect = 2.7
Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 6/162 (3%)
Query: 88 FDYRGVRNDASLVPPIRQTASIFKQPVTVYKTQDSKVKTDLKHGTQEKPKQLFWEKRLEG 147
+DY+ +D+ P A + V V Q S + ++ Q P + +
Sbjct: 461 YDYKVADDDSDGEPSTEDKA--LETKVDVNDAQHSHLAENVSVNVQRSPNEKDPPNMVSS 518
Query: 148 LTACDANGVIGTTSLPKYIKSLGP---YTSDATTIQSLATALHVSSQPITGQIGSKQAIK 204
+ + G I +SL I GP Y+ D +I+S T +HV G+ +++ +
Sbjct: 519 QDSPLSMGDI-LSSLDAGISLPGPGPEYSVDRQSIKSNGTQMHVKRSNFWGRNNGRKSQQ 577
Query: 205 DNPGVFLNPEQPLIAAVTITKEDVRRQEERVKRARQRLRQAL 246
E+ I + ITK D++ + + R L+ +L
Sbjct: 578 SELADSSGEEELAIQRLEITKNDLQIRIAKEARGNAILQASL 619
>12_02_1147 -
26459481-26460124,26460241-26460382,26461658-26461699,
26463377-26463502
Length = 317
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 10/52 (19%)
Query: 16 PKGWQREEVVRK----------TGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
P+GW ++++V+ T G+ ++ + SPTG++ ++K +L +YL
Sbjct: 36 PEGWTKKKLVKCPLKVPFLKLFTPQRGGRFEIVFVSPTGEEIKNKRQLSQYL 87
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYYYSP-TGKKFRSKPELVRYL 57
LP+GW +E V RKT + D +Y P FR+K Y+
Sbjct: 149 LPQGWVKEVVFRKTHTGRIRRDRHYTDPIKSYVFRTKRSAAFYV 192
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYYYSP 42
LP+GW +E V RKT + D +Y P
Sbjct: 182 LPQGWVKEVVFRKTNTGGIRRDRHYTDP 209
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 112 QPVTVYKTQDSKVKTDLKHGTQEKPKQLFWEKRLEGLTACDANGVI 157
+ + VYK + K+K+D+K G + KQL + + +G+ D + ++
Sbjct: 300 EKMNVYKKLE-KIKSDIKDGQHKSDKQLLLQLQKKGVDQVDLHVLV 344
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYYYSP 42
LP+GW +E V RKT + D +Y P
Sbjct: 182 LPQGWVKEVVFRKTNTGKIRRDRHYTDP 209
>11_07_0014 +
27379941-27379974,27381975-27382033,27382561-27382782,
27383727-27383810,27385054-27385131,27385716-27385832,
27385956-27386019,27386399-27386402,27386565-27386613,
27388973-27389440
Length = 392
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 16 PKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
P GW E +R + K Y + KFRSKPE+ +L
Sbjct: 115 PTGWDIENHLRNDQKTKDK-QYYRHKDYNHKFRSKPEVQYFL 155
>09_02_0267 -
6485428-6485895,6488255-6488303,6488466-6488469,
6488849-6488912,6489036-6489152,6489737-6489814,
6491058-6491141,6492086-6492307,6492835-6492893,
6494894-6494927
Length = 392
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 16 PKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
P GW E +R + K Y + KFRSKPE+ +L
Sbjct: 115 PTGWDIENHLRNDQKTKDK-QYYRHKDYNHKFRSKPEVQYFL 155
>06_03_0390 - 20280355-20281178,20281392-20281565,20281613-20281847
Length = 410
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 206 NPGVFLNPEQPLIAAV----TITKEDVRRQEERV 235
NP VF P+Q +AA+ T+ KED Q + V
Sbjct: 77 NPAVFRTPQQNAVAAITLLDTLLKEDALNQADHV 110
>05_05_0006 + 21450739-21451434
Length = 231
Score = 27.9 bits (59), Expect = 8.2
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 4/110 (3%)
Query: 136 PKQLFWEKRLEGLTACDANGVIGTTSLPKYIKSLGPYTSDATTIQSLATALHVSSQPITG 195
PKQ L L + A G +G ++ + S P +S +TT + A S+ +
Sbjct: 35 PKQRLLRSLLSSLVS-RARGALGGRAVSRPKSSAPPSSSASTTTTAAAAFTSTSTTGASA 93
Query: 196 QIGSKQAIKDNPGVFLNPEQPLIAAVTITKEDVRRQEERVKRARQRLRQA 245
P + + V +++VRRQ + R R+R R A
Sbjct: 94 TTVDSSKESWGPATYAATNTHTLYEV---EDEVRRQRRKDMRRRRRRRAA 140
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.131 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,751,323
Number of Sequences: 37544
Number of extensions: 262786
Number of successful extensions: 739
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 726
Number of HSP's gapped (non-prelim): 21
length of query: 249
length of database: 14,793,348
effective HSP length: 80
effective length of query: 169
effective length of database: 11,789,828
effective search space: 1992480932
effective search space used: 1992480932
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
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