GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001425-TA|BGIBMGA001425-PA|IPR001739|Methyl-CpG binding
         (249 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    25   1.6  
EF117201-1|ABL67438.1|  481|Anopheles gambiae serpin 17 protein.       24   4.8  
AF004916-1|AAB94672.1|  686|Anopheles gambiae pro-phenol oxidase...    24   4.8  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   6.4  

>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1154

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 201  QAIKDNPGVFLNPEQPLIAAVTITKEDVRRQEERVKRARQRLRQ 244
            QA+ + P   L+PE     AV  T+ D+R    R +  RQR  Q
Sbjct: 1031 QAMLEEPANRLDPE-----AVRCTRNDLRNVARRTQTVRQREEQ 1069


>EF117201-1|ABL67438.1|  481|Anopheles gambiae serpin 17 protein.
          Length = 481

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 104 RQTASIFKQPVTVYKTQDSKVKT 126
           R  + I+ QPV V K+Q   +KT
Sbjct: 50  RNPSEIYPQPVYVPKSQQETIKT 72


>AF004916-1|AAB94672.1|  686|Anopheles gambiae pro-phenol oxidase
           subunit 2 protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 1   MNISIERKRSDCSALPKGWQREEVVRKTGLSAG 33
           + + + R  +  + L   WQR +V   TGL  G
Sbjct: 436 LGVQLNRANAPANVLLTYWQRSQVDLATGLDFG 468


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 39  YYSPTGKK--FRSKPELVRYLGDSVDLSCFDFQQGQINTMLLCKAK 82
           YY+   K+  F+   +L++  G  +D + F   QG++ ++ + K+K
Sbjct: 184 YYTIDNKRVHFKEVSKLLKQHGIDLDHNRFLILQGEVESIAMMKSK 229


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.131    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,128
Number of Sequences: 2123
Number of extensions: 9097
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 4
length of query: 249
length of database: 516,269
effective HSP length: 62
effective length of query: 187
effective length of database: 384,643
effective search space: 71928241
effective search space used: 71928241
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)