Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001425-TA|BGIBMGA001425-PA|IPR001739|Methyl-CpG binding
(249 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC032638-1|AAH32638.1| 411|Homo sapiens methyl-CpG binding doma... 249 8e-66
AF120993-1|AAD56597.1| 411|Homo sapiens methyl-CpG binding prot... 249 8e-66
AF072242-1|AAC68871.1| 411|Homo sapiens methyl-CpG binding prot... 249 8e-66
AF072247-1|AAC68876.1| 291|Homo sapiens methyl-CpG binding doma... 244 2e-64
AC005943-1|AAC72104.1| 291|Homo sapiens methyl-CpG binding prot... 244 2e-64
BC043619-1|AAH43619.1| 259|Homo sapiens MBD3 protein protein. 190 5e-48
BC009372-1|AAH09372.1| 259|Homo sapiens MBD3 protein protein. 190 5e-48
AF039701-1|AAC18050.1| 200|Homo sapiens antigen NY-CO-41 protein. 149 1e-35
BC009438-1|AAH09438.1| 174|Homo sapiens MBD3 protein protein. 120 6e-27
BC032443-1|AAH32443.1| 170|Homo sapiens MBD3 protein protein. 116 6e-26
AF120989-1|AAD56596.1| 302|Homo sapiens testis-specific methyl-... 113 7e-25
AF072246-1|AAC68875.1| 146|Homo sapiens testis specific methyl-... 98 2e-20
Y10746-1|CAA71735.1| 556|Homo sapiens methyl-CpG binding protei... 83 7e-16
EF488685-1|ABP02056.1| 536|Homo sapiens methyl-CpG binding doma... 83 7e-16
BC033242-1|AAH33242.1| 549|Homo sapiens methyl-CpG binding doma... 83 7e-16
AJ564845-1|CAD92308.1| 550|Homo sapiens methyl-CpG binding doma... 83 7e-16
AF120981-1|AAD50371.1| 605|Homo sapiens methyl-CpG binding prot... 83 7e-16
AF078833-1|AAD51445.1| 503|Homo sapiens methyl-CpG binding prot... 83 7e-16
AF078832-1|AAD51444.1| 549|Homo sapiens methyl-CpG binding prot... 83 7e-16
AF078831-1|AAD51443.1| 586|Homo sapiens methyl-CpG binding prot... 83 7e-16
AF078830-1|AAD51442.1| 605|Homo sapiens methyl-CpG binding prot... 83 7e-16
BC112064-1|AAI12065.1| 194|Homo sapiens methyl-CpG binding doma... 73 1e-12
BC112058-1|AAI12059.1| 194|Homo sapiens methyl-CpG binding doma... 73 1e-12
AY038022-1|AAK72591.1| 194|Homo sapiens methyl-CpG binding doma... 73 1e-12
AF503919-1|AAM28154.2| 204|Homo sapiens methyl-CpG binding doma... 64 3e-10
Y12643-1|CAA73190.1| 486|Homo sapiens methyl-CpG binding protei... 61 4e-09
X99686-1|CAA68001.1| 486|Homo sapiens methyl-CpG-binding protei... 61 4e-09
X94628-1|CAA64331.1| 477|Homo sapiens methyl-CpG-binding prote... 61 4e-09
X89430-1|CAA61599.1| 476|Homo sapiens methyl CpG binding protei... 61 4e-09
L37298-1|AAC32737.1| 486|Homo sapiens methyl-CpG-binding protei... 61 4e-09
BX538060-1|CAD97991.1| 516|Homo sapiens hypothetical protein pr... 61 4e-09
BC011612-1|AAH11612.1| 486|Homo sapiens methyl CpG binding prot... 61 4e-09
AY541280-1|AAS55455.1| 498|Homo sapiens methyl CpG binding prot... 61 4e-09
AJ132917-1|CAB46446.1| 486|Homo sapiens Methyl-CpG-binding prot... 61 4e-09
AF158180-1|AAF33023.1| 486|Homo sapiens methyl CpG binding prot... 61 4e-09
AF030876-2|AAC08757.1| 486|Homo sapiens Methyl-CpG binding prot... 61 4e-09
CR450305-1|CAG29301.1| 574|Homo sapiens MBD4 protein. 49 1e-05
BC011752-1|AAH11752.1| 574|Homo sapiens MBD4 protein protein. 49 1e-05
AF532602-1|AAP97338.1| 540|Homo sapiens methyl-CpG binding doma... 49 1e-05
AF494057-1|AAM00008.1| 580|Homo sapiens methyl-CpG binding doma... 49 1e-05
AF120999-1|AAD50374.1| 580|Homo sapiens methyl-CpG binding prot... 49 1e-05
AF114784-1|AAD22195.1| 580|Homo sapiens methyl-CpG binding endo... 49 1e-05
AF072250-1|AAC68879.1| 580|Homo sapiens methyl-CpG binding prot... 49 1e-05
BC012576-1|AAH12576.1| 643|Homo sapiens BAZ2B protein protein. 43 0.001
AB032255-1|BAA89212.1| 1972|Homo sapiens bromodomain adjacent to... 43 0.001
AF000422-1|AAB60864.1| 407|Homo sapiens TTF-I interacting pepti... 40 0.006
AB002312-1|BAA20773.2| 1899|Homo sapiens KIAA0314 protein protein. 40 0.006
AB032254-1|BAA89211.1| 1878|Homo sapiens bromodomain adjacent to... 39 0.014
AK027612-1|BAB55231.1| 708|Homo sapiens protein ( Homo sapiens ... 38 0.025
AB040909-1|BAA96000.2| 2142|Homo sapiens KIAA1476 protein protein. 38 0.025
BC115394-1|AAI15395.1| 1076|Homo sapiens glutamate receptor inte... 34 0.54
BC115393-1|AAI15394.1| 1076|Homo sapiens glutamate receptor inte... 34 0.54
BC069076-1|AAH69076.1| 226|Homo sapiens prophet of Pit1, paired... 31 3.8
AF076215-1|AAC77454.1| 226|Homo sapiens prophet of Pit1 protein. 31 3.8
AF076214-1|AAC77453.1| 226|Homo sapiens prophet of Pit1 protein. 31 3.8
AF041141-1|AAC27900.1| 226|Homo sapiens pituitary specific home... 31 3.8
U07374-1|AAB60643.2| 267|Homo sapiens cathepsin S protein. 30 8.8
S93414-1|AAB22005.1| 331|Homo sapiens cathepsin S protein. 30 8.8
M86553-1|AAA35655.1| 331|Homo sapiens cathepsin protein. 30 8.8
BC092463-1|AAH92463.1| 524|Homo sapiens 1-acylglycerol-3-phosph... 30 8.8
BC024892-1|AAH24892.2| 275|Homo sapiens AGPAT7 protein protein. 30 8.8
AY734233-1|AAU34184.1| 524|Homo sapiens Plsc-domain containing ... 30 8.8
AF529233-1|AAP97722.1| 351|Homo sapiens PCPD protein protein. 30 8.8
>BC032638-1|AAH32638.1| 411|Homo sapiens methyl-CpG binding domain
protein 2 protein.
Length = 411
Score = 249 bits (609), Expect = 8e-66
Identities = 127/243 (52%), Positives = 173/243 (71%), Gaps = 7/243 (2%)
Query: 8 KRSDCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVDLSCFD 67
KR DC ALP GW++EEV+RK+GLSAGK DVYY+SP+GKKFRSKP+L RYLG++VDLS FD
Sbjct: 148 KRMDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFD 207
Query: 68 FQQGQINTMLLCKAKK--ARAQFDYRGVRNDASLVPPIRQTASIFKQPVT-VYKTQDSKV 124
F+ G++ L K K+ + + D + PIRQTASIFKQPVT V +KV
Sbjct: 208 FRTGKMMPSKLQKNKQRLRNDPLNQNKGKPDLNTTLPIRQTASIFKQPVTKVTNHPSNKV 267
Query: 125 KTDLKHGTQEKPKQLFWEKRLEGLTACD-ANGVIGTTSLPKYIKSLGPYTSDATTIQSLA 183
K+D + E+P+QLFWEKRL+GL+A D +I T LPK ++ +GP ++D T + ++A
Sbjct: 268 KSDPQR-MNEQPRQLFWEKRLQGLSASDVTEQIIKTMELPKGLQGVGPGSNDETLLSAVA 326
Query: 184 TALHVSSQPITGQIGSKQAIKDNPGVFLNPEQPLIAAVTITKEDVRRQEERVKRARQRLR 243
+ALH SS PITGQ+ + A++ NP V+LN QPL A +T ED+R+QEERV++ R++L
Sbjct: 327 SALHTSSAPITGQVSA--AVEKNPAVWLNTSQPLCKAFIVTDEDIRKQEERVQQVRKKLE 384
Query: 244 QAL 246
+AL
Sbjct: 385 EAL 387
>AF120993-1|AAD56597.1| 411|Homo sapiens methyl-CpG binding protein
2 protein.
Length = 411
Score = 249 bits (609), Expect = 8e-66
Identities = 127/243 (52%), Positives = 173/243 (71%), Gaps = 7/243 (2%)
Query: 8 KRSDCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVDLSCFD 67
KR DC ALP GW++EEV+RK+GLSAGK DVYY+SP+GKKFRSKP+L RYLG++VDLS FD
Sbjct: 148 KRMDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFD 207
Query: 68 FQQGQINTMLLCKAKK--ARAQFDYRGVRNDASLVPPIRQTASIFKQPVT-VYKTQDSKV 124
F+ G++ L K K+ + + D + PIRQTASIFKQPVT V +KV
Sbjct: 208 FRTGKMMPSKLQKNKQRLRNDPLNQNKGKPDLNTTLPIRQTASIFKQPVTKVTNHPSNKV 267
Query: 125 KTDLKHGTQEKPKQLFWEKRLEGLTACD-ANGVIGTTSLPKYIKSLGPYTSDATTIQSLA 183
K+D + E+P+QLFWEKRL+GL+A D +I T LPK ++ +GP ++D T + ++A
Sbjct: 268 KSDPQR-MNEQPRQLFWEKRLQGLSASDVTEQIIKTMELPKGLQGVGPGSNDETLLSAVA 326
Query: 184 TALHVSSQPITGQIGSKQAIKDNPGVFLNPEQPLIAAVTITKEDVRRQEERVKRARQRLR 243
+ALH SS PITGQ+ + A++ NP V+LN QPL A +T ED+R+QEERV++ R++L
Sbjct: 327 SALHTSSAPITGQVSA--AVEKNPAVWLNTSQPLCKAFIVTDEDIRKQEERVQQVRKKLE 384
Query: 244 QAL 246
+AL
Sbjct: 385 EAL 387
>AF072242-1|AAC68871.1| 411|Homo sapiens methyl-CpG binding protein
MBD2 protein.
Length = 411
Score = 249 bits (609), Expect = 8e-66
Identities = 127/243 (52%), Positives = 173/243 (71%), Gaps = 7/243 (2%)
Query: 8 KRSDCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVDLSCFD 67
KR DC ALP GW++EEV+RK+GLSAGK DVYY+SP+GKKFRSKP+L RYLG++VDLS FD
Sbjct: 148 KRMDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFD 207
Query: 68 FQQGQINTMLLCKAKK--ARAQFDYRGVRNDASLVPPIRQTASIFKQPVT-VYKTQDSKV 124
F+ G++ L K K+ + + D + PIRQTASIFKQPVT V +KV
Sbjct: 208 FRTGKMMPSKLQKNKQRLRNDPLNQNKGKPDLNTTLPIRQTASIFKQPVTKVTNHPSNKV 267
Query: 125 KTDLKHGTQEKPKQLFWEKRLEGLTACD-ANGVIGTTSLPKYIKSLGPYTSDATTIQSLA 183
K+D + E+P+QLFWEKRL+GL+A D +I T LPK ++ +GP ++D T + ++A
Sbjct: 268 KSDPQR-MNEQPRQLFWEKRLQGLSASDVTEQIIKTMELPKGLQGVGPGSNDETLLSAVA 326
Query: 184 TALHVSSQPITGQIGSKQAIKDNPGVFLNPEQPLIAAVTITKEDVRRQEERVKRARQRLR 243
+ALH SS PITGQ+ + A++ NP V+LN QPL A +T ED+R+QEERV++ R++L
Sbjct: 327 SALHTSSAPITGQVSA--AVEKNPAVWLNTSQPLCKAFIVTDEDIRKQEERVQQVRKKLE 384
Query: 244 QAL 246
+AL
Sbjct: 385 EAL 387
>AF072247-1|AAC68876.1| 291|Homo sapiens methyl-CpG binding
domain-containing protein MBD3 protein.
Length = 291
Score = 244 bits (597), Expect = 2e-64
Identities = 126/249 (50%), Positives = 175/249 (70%), Gaps = 13/249 (5%)
Query: 5 IERKRSDCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVDLS 64
+ERKR +C ALP+GW+REEV R++GLSAG DV+YYSP+GKKFRSKP+L RYLG S+DLS
Sbjct: 1 MERKRWECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLS 60
Query: 65 CFDFQQGQINTMLLCKAKKARAQFDYRGV-----RNDASLVPPIRQTASIFKQPVT-VYK 118
FDF+ G+ ML+ K K+R + Y + D + P+RQTASIFKQPVT +
Sbjct: 61 TFDFRTGK---MLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITN 117
Query: 119 TQDSKVKTDLKHGTQEKPKQLFWEKRLEGLTACD-ANGVIGTTSLPKYIKSLGPYTSDAT 177
+KVK+D + ++P+QLFWEK+L GL A D A ++ T LPK ++ +GP +D T
Sbjct: 118 HPSNKVKSDPQKAV-DQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDET 176
Query: 178 TIQSLATALHVSSQPITGQIGSKQAIKDNPGVFLNPEQPLIAAVTITKEDVRRQEERVKR 237
+ ++A+ALH S+ PITGQ+ + A++ NPGV+LN QPL A +T ED+R+QEE V++
Sbjct: 177 LLSAIASALHTSTMPITGQLSA--AVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQ 234
Query: 238 ARQRLRQAL 246
R+RL +AL
Sbjct: 235 VRKRLEEAL 243
>AC005943-1|AAC72104.1| 291|Homo sapiens methyl-CpG binding protein
MBD3 protein.
Length = 291
Score = 244 bits (597), Expect = 2e-64
Identities = 126/249 (50%), Positives = 175/249 (70%), Gaps = 13/249 (5%)
Query: 5 IERKRSDCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVDLS 64
+ERKR +C ALP+GW+REEV R++GLSAG DV+YYSP+GKKFRSKP+L RYLG S+DLS
Sbjct: 1 MERKRWECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLS 60
Query: 65 CFDFQQGQINTMLLCKAKKARAQFDYRGV-----RNDASLVPPIRQTASIFKQPVT-VYK 118
FDF+ G+ ML+ K K+R + Y + D + P+RQTASIFKQPVT +
Sbjct: 61 TFDFRTGK---MLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITN 117
Query: 119 TQDSKVKTDLKHGTQEKPKQLFWEKRLEGLTACD-ANGVIGTTSLPKYIKSLGPYTSDAT 177
+KVK+D + ++P+QLFWEK+L GL A D A ++ T LPK ++ +GP +D T
Sbjct: 118 HPSNKVKSDPQKAV-DQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDET 176
Query: 178 TIQSLATALHVSSQPITGQIGSKQAIKDNPGVFLNPEQPLIAAVTITKEDVRRQEERVKR 237
+ ++A+ALH S+ PITGQ+ + A++ NPGV+LN QPL A +T ED+R+QEE V++
Sbjct: 177 LLSAIASALHTSTMPITGQLSA--AVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQ 234
Query: 238 ARQRLRQAL 246
R+RL +AL
Sbjct: 235 VRKRLEEAL 243
>BC043619-1|AAH43619.1| 259|Homo sapiens MBD3 protein protein.
Length = 259
Score = 190 bits (462), Expect = 5e-48
Identities = 102/213 (47%), Positives = 143/213 (67%), Gaps = 13/213 (6%)
Query: 41 SPTGKKFRSKPELVRYLGDSVDLSCFDFQQGQINTMLLCKAKKARAQFDYRGVRN----- 95
SP+GKKFRSKP+L RYLG S+DLS FDF+ G+ ML+ K K+R + Y
Sbjct: 5 SPSGKKFRSKPQLARYLGGSMDLSTFDFRTGK---MLMSKMNKSRQRVRYDSSNQVKGKP 61
Query: 96 DASLVPPIRQTASIFKQPVT-VYKTQDSKVKTDLKHGTQEKPKQLFWEKRLEGLTACD-A 153
D + P+RQTASIFKQPVT + +KVK+D + ++P+QLFWEK+L GL A D A
Sbjct: 62 DLNTALPVRQTASIFKQPVTKITNHPSNKVKSDPQKAV-DQPRQLFWEKKLSGLNAFDIA 120
Query: 154 NGVIGTTSLPKYIKSLGPYTSDATTIQSLATALHVSSQPITGQIGSKQAIKDNPGVFLNP 213
++ T LPK ++ +GP +D T + ++A+ALH S+ PITGQ+ + A++ NPGV+LN
Sbjct: 121 EELVKTMDLPKGLQGVGPGCTDETLLSAIASALHTSTMPITGQLSA--AVEKNPGVWLNT 178
Query: 214 EQPLIAAVTITKEDVRRQEERVKRARQRLRQAL 246
QPL A +T ED+R+QEE V++ R+RL +AL
Sbjct: 179 TQPLCKAFMVTDEDIRKQEELVQQVRKRLEEAL 211
>BC009372-1|AAH09372.1| 259|Homo sapiens MBD3 protein protein.
Length = 259
Score = 190 bits (462), Expect = 5e-48
Identities = 102/213 (47%), Positives = 143/213 (67%), Gaps = 13/213 (6%)
Query: 41 SPTGKKFRSKPELVRYLGDSVDLSCFDFQQGQINTMLLCKAKKARAQFDYRGVRN----- 95
SP+GKKFRSKP+L RYLG S+DLS FDF+ G+ ML+ K K+R + Y
Sbjct: 5 SPSGKKFRSKPQLARYLGGSMDLSTFDFRTGK---MLMSKMNKSRQRVRYDSSNQVKGKP 61
Query: 96 DASLVPPIRQTASIFKQPVT-VYKTQDSKVKTDLKHGTQEKPKQLFWEKRLEGLTACD-A 153
D + P+RQTASIFKQPVT + +KVK+D + ++P+QLFWEK+L GL A D A
Sbjct: 62 DLNTALPVRQTASIFKQPVTKITNHPSNKVKSDPQKAV-DQPRQLFWEKKLSGLNAFDIA 120
Query: 154 NGVIGTTSLPKYIKSLGPYTSDATTIQSLATALHVSSQPITGQIGSKQAIKDNPGVFLNP 213
++ T LPK ++ +GP +D T + ++A+ALH S+ PITGQ+ + A++ NPGV+LN
Sbjct: 121 EELVKTMDLPKGLQGVGPGCTDETLLSAIASALHTSTMPITGQLSA--AVEKNPGVWLNT 178
Query: 214 EQPLIAAVTITKEDVRRQEERVKRARQRLRQAL 246
QPL A +T ED+R+QEE V++ R+RL +AL
Sbjct: 179 TQPLCKAFMVTDEDIRKQEELVQQVRKRLEEAL 211
>AF039701-1|AAC18050.1| 200|Homo sapiens antigen NY-CO-41 protein.
Length = 200
Score = 149 bits (360), Expect = 1e-35
Identities = 77/153 (50%), Positives = 108/153 (70%), Gaps = 5/153 (3%)
Query: 96 DASLVPPIRQTASIFKQPVT-VYKTQDSKVKTDLKHGTQEKPKQLFWEKRLEGLTACD-A 153
D + PIRQTASIFKQPVT V +KVK+D + E+P+QLFWEKRL+GL+A D
Sbjct: 27 DLNTTLPIRQTASIFKQPVTKVTNHPSNKVKSDPQR-MNEQPRQLFWEKRLQGLSASDVT 85
Query: 154 NGVIGTTSLPKYIKSLGPYTSDATTIQSLATALHVSSQPITGQIGSKQAIKDNPGVFLNP 213
+I T LPK ++ +GP ++D T + ++A+ALH SS PITGQ+ + A++ NP V+LN
Sbjct: 86 EQIIKTMELPKGLQGVGPGSNDETLLSAVASALHTSSAPITGQVSA--AVEKNPAVWLNT 143
Query: 214 EQPLIAAVTITKEDVRRQEERVKRARQRLRQAL 246
QPL A +T ED+R+QEERV++ R++L +AL
Sbjct: 144 SQPLCKAFIVTDEDIRKQEERVQQVRKKLEEAL 176
>BC009438-1|AAH09438.1| 174|Homo sapiens MBD3 protein protein.
Length = 174
Score = 120 bits (288), Expect = 6e-27
Identities = 59/126 (46%), Positives = 89/126 (70%), Gaps = 4/126 (3%)
Query: 122 SKVKTDLKHGTQEKPKQLFWEKRLEGLTACD-ANGVIGTTSLPKYIKSLGPYTSDATTIQ 180
+KVK+D + ++P+QLFWEK+L GL A D A ++ T LPK ++ +GP +D T +
Sbjct: 4 NKVKSDPQKAV-DQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLS 62
Query: 181 SLATALHVSSQPITGQIGSKQAIKDNPGVFLNPEQPLIAAVTITKEDVRRQEERVKRARQ 240
++A+ALH S+ PITGQ+ + A++ NPGV+LN QPL A +T ED+R+QEE V++ R+
Sbjct: 63 AIASALHTSTMPITGQLSA--AVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRK 120
Query: 241 RLRQAL 246
RL +AL
Sbjct: 121 RLEEAL 126
>BC032443-1|AAH32443.1| 170|Homo sapiens MBD3 protein protein.
Length = 170
Score = 116 bits (280), Expect = 6e-26
Identities = 55/114 (48%), Positives = 82/114 (71%), Gaps = 3/114 (2%)
Query: 134 EKPKQLFWEKRLEGLTACD-ANGVIGTTSLPKYIKSLGPYTSDATTIQSLATALHVSSQP 192
++P+QLFWEK+L GL A D A ++ T LPK ++ +GP +D T + ++A+ALH S+ P
Sbjct: 11 DQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSAIASALHTSTMP 70
Query: 193 ITGQIGSKQAIKDNPGVFLNPEQPLIAAVTITKEDVRRQEERVKRARQRLRQAL 246
ITGQ+ + A++ NPGV+LN QPL A +T ED+R+QEE V++ R+RL +AL
Sbjct: 71 ITGQLSA--AVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLEEAL 122
>AF120989-1|AAD56596.1| 302|Homo sapiens testis-specific methyl-CpG
binding protein 2 protein.
Length = 302
Score = 113 bits (271), Expect = 7e-25
Identities = 50/76 (65%), Positives = 63/76 (82%)
Query: 8 KRSDCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVDLSCFD 67
KR DC ALP GW++EEV+RK+GLSAGK DVYY+SP+GKKFRSKP+L RYLG++VDLS FD
Sbjct: 148 KRMDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFD 207
Query: 68 FQQGQINTMLLCKAKK 83
F+ G++ L K K+
Sbjct: 208 FRTGKMMPSKLQKNKQ 223
>AF072246-1|AAC68875.1| 146|Homo sapiens testis specific
methyl-CpG binding protein MBD2 protein.
Length = 146
Score = 98.3 bits (234), Expect = 2e-20
Identities = 43/66 (65%), Positives = 56/66 (84%)
Query: 18 GWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQGQINTML 77
GW++EEV+RK+GLSAGK DVYY+SP+GKKFRSKP+L RYLG++VDLS FDF+ G++
Sbjct: 2 GWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFRTGKMMPSK 61
Query: 78 LCKAKK 83
L K K+
Sbjct: 62 LQKNKQ 67
>Y10746-1|CAA71735.1| 556|Homo sapiens methyl-CpG binding protein
protein.
Length = 556
Score = 83.4 bits (197), Expect = 7e-16
Identities = 36/61 (59%), Positives = 44/61 (72%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQ 70
DC AL GW+R EV RK+G + G+ D YY SPTG + RSK EL RYLG + DL+ FDF+Q
Sbjct: 7 DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQ 66
Query: 71 G 71
G
Sbjct: 67 G 67
>EF488685-1|ABP02056.1| 536|Homo sapiens methyl-CpG binding
domain protein 1 variant 8 protein.
Length = 536
Score = 83.4 bits (197), Expect = 7e-16
Identities = 36/61 (59%), Positives = 44/61 (72%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQ 70
DC AL GW+R EV RK+G + G+ D YY SPTG + RSK EL RYLG + DL+ FDF+Q
Sbjct: 7 DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQ 66
Query: 71 G 71
G
Sbjct: 67 G 67
>BC033242-1|AAH33242.1| 549|Homo sapiens methyl-CpG binding
domain protein 1 protein.
Length = 549
Score = 83.4 bits (197), Expect = 7e-16
Identities = 36/61 (59%), Positives = 44/61 (72%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQ 70
DC AL GW+R EV RK+G + G+ D YY SPTG + RSK EL RYLG + DL+ FDF+Q
Sbjct: 7 DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQ 66
Query: 71 G 71
G
Sbjct: 67 G 67
>AJ564845-1|CAD92308.1| 550|Homo sapiens methyl-CpG binding
domain protein 1, splice form 6 protein.
Length = 550
Score = 83.4 bits (197), Expect = 7e-16
Identities = 36/61 (59%), Positives = 44/61 (72%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQ 70
DC AL GW+R EV RK+G + G+ D YY SPTG + RSK EL RYLG + DL+ FDF+Q
Sbjct: 7 DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQ 66
Query: 71 G 71
G
Sbjct: 67 G 67
>AF120981-1|AAD50371.1| 605|Homo sapiens methyl-CpG binding
protein 1 protein.
Length = 605
Score = 83.4 bits (197), Expect = 7e-16
Identities = 36/61 (59%), Positives = 44/61 (72%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQ 70
DC AL GW+R EV RK+G + G+ D YY SPTG + RSK EL RYLG + DL+ FDF+Q
Sbjct: 7 DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQ 66
Query: 71 G 71
G
Sbjct: 67 G 67
>AF078833-1|AAD51445.1| 503|Homo sapiens methyl-CpG binding
protein splice variant 4 protein.
Length = 503
Score = 83.4 bits (197), Expect = 7e-16
Identities = 36/61 (59%), Positives = 44/61 (72%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQ 70
DC AL GW+R EV RK+G + G+ D YY SPTG + RSK EL RYLG + DL+ FDF+Q
Sbjct: 7 DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQ 66
Query: 71 G 71
G
Sbjct: 67 G 67
>AF078832-1|AAD51444.1| 549|Homo sapiens methyl-CpG binding
protein splice variant 3 protein.
Length = 549
Score = 83.4 bits (197), Expect = 7e-16
Identities = 36/61 (59%), Positives = 44/61 (72%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQ 70
DC AL GW+R EV RK+G + G+ D YY SPTG + RSK EL RYLG + DL+ FDF+Q
Sbjct: 7 DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQ 66
Query: 71 G 71
G
Sbjct: 67 G 67
>AF078831-1|AAD51443.1| 586|Homo sapiens methyl-CpG binding
protein splice variant 2 protein.
Length = 586
Score = 83.4 bits (197), Expect = 7e-16
Identities = 36/61 (59%), Positives = 44/61 (72%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQ 70
DC AL GW+R EV RK+G + G+ D YY SPTG + RSK EL RYLG + DL+ FDF+Q
Sbjct: 7 DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQ 66
Query: 71 G 71
G
Sbjct: 67 G 67
>AF078830-1|AAD51442.1| 605|Homo sapiens methyl-CpG binding
protein splice variant 1 protein.
Length = 605
Score = 83.4 bits (197), Expect = 7e-16
Identities = 36/61 (59%), Positives = 44/61 (72%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVDLSCFDFQQ 70
DC AL GW+R EV RK+G + G+ D YY SPTG + RSK EL RYLG + DL+ FDF+Q
Sbjct: 7 DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQ 66
Query: 71 G 71
G
Sbjct: 67 G 67
>BC112064-1|AAI12065.1| 194|Homo sapiens methyl-CpG binding domain
protein 3-like 1 protein.
Length = 194
Score = 72.5 bits (170), Expect = 1e-12
Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 3/147 (2%)
Query: 102 PIRQTASIFKQPVT-VYKTQDSKVKTDLKHGTQEKPKQLFWEKRLEGLTACDANGVIGTT 160
P+R ++ FK+PVT + ++V+ + EKP+Q+ W++RL+GL A + G + +T
Sbjct: 27 PLRMSSYTFKRPVTRITPHPGNEVRYHQWEESLEKPQQVCWQRRLQGLQAYSSAGELSST 86
Query: 161 -SLPKYIKSLGPYTSDATTIQSLATALHVSSQPITGQIGSKQAIKDNPGVFLNPEQPLIA 219
L ++ L P + + ++ LA+ L S P+ S A++ P + Q L
Sbjct: 87 LDLANTLQKLVPSYTGGSLLEDLASGLEHSC-PMPHLACSSDAVEIIPAEGVGISQLLCK 145
Query: 220 AVTITKEDVRRQEERVKRARQRLRQAL 246
+T+ED+R+QE +VK R+RL AL
Sbjct: 146 QFLVTEEDIRKQEGKVKTVRERLAIAL 172
>BC112058-1|AAI12059.1| 194|Homo sapiens methyl-CpG binding domain
protein 3-like protein.
Length = 194
Score = 72.5 bits (170), Expect = 1e-12
Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 3/147 (2%)
Query: 102 PIRQTASIFKQPVT-VYKTQDSKVKTDLKHGTQEKPKQLFWEKRLEGLTACDANGVIGTT 160
P+R ++ FK+PVT + ++V+ + EKP+Q+ W++RL+GL A + G + +T
Sbjct: 27 PLRMSSYTFKRPVTRITPHPGNEVRYHQWEESLEKPQQVCWQRRLQGLQAYSSAGELSST 86
Query: 161 -SLPKYIKSLGPYTSDATTIQSLATALHVSSQPITGQIGSKQAIKDNPGVFLNPEQPLIA 219
L ++ L P + + ++ LA+ L S P+ S A++ P + Q L
Sbjct: 87 LDLANTLQKLVPSYTGGSLLEDLASGLEHSC-PMPHLACSSDAVEIIPAEGVGISQLLCK 145
Query: 220 AVTITKEDVRRQEERVKRARQRLRQAL 246
+T+ED+R+QE +VK R+RL AL
Sbjct: 146 QFLVTEEDIRKQEGKVKTVRERLAIAL 172
>AY038022-1|AAK72591.1| 194|Homo sapiens methyl-CpG binding domain
protein 3-like protein.
Length = 194
Score = 72.5 bits (170), Expect = 1e-12
Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 3/147 (2%)
Query: 102 PIRQTASIFKQPVT-VYKTQDSKVKTDLKHGTQEKPKQLFWEKRLEGLTACDANGVIGTT 160
P+R ++ FK+PVT + ++V+ + EKP+Q+ W++RL+GL A + G + +T
Sbjct: 27 PLRMSSYTFKRPVTRITPHPGNEVRYHQWEESLEKPQQVCWQRRLQGLQAYSSAGELSST 86
Query: 161 -SLPKYIKSLGPYTSDATTIQSLATALHVSSQPITGQIGSKQAIKDNPGVFLNPEQPLIA 219
L ++ L P + + ++ LA+ L S P+ S A++ P + Q L
Sbjct: 87 LDLANTLQKLVPSYTGGSLLEDLASGLEHSC-PMPHLACSSDAVEIIPAEGVGISQLLCK 145
Query: 220 AVTITKEDVRRQEERVKRARQRLRQAL 246
+T+ED+R+QE +VK R+RL AL
Sbjct: 146 QFLVTEEDIRKQEGKVKTVRERLAIAL 172
>AF503919-1|AAM28154.2| 204|Homo sapiens methyl-CpG binding domain
protein 3-like protein 2 protein.
Length = 204
Score = 64.5 bits (150), Expect = 3e-10
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 8/157 (5%)
Query: 94 RNDASLVPPIRQTASIFKQPVTVYKTQ-DSKVKTDLKHGTQEKPKQLFWEKRLEGLTACD 152
R A P+R T+ IF++PVT ++ D++V+ EKP+QL +RL+ L C
Sbjct: 41 RRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCS 100
Query: 153 ANGVIGTTSLPKYIKSLGPYTSDATTIQSL--ATALHVSSQPITGQIGSKQAIKDNPGVF 210
+ G S P +++S+ + T +SL A A V S P+ G A+ P
Sbjct: 101 SQG---EGSSPLHLESVLSILAPGTASESLDRAGAERVRS-PLEPTPGRFPAVAGGPTPG 156
Query: 211 LNPE-QPLIAAVTITKEDVRRQEERVKRARQRLRQAL 246
+ + P ++ +T D+RRQ RVK+AR+RL +AL
Sbjct: 157 MGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKAL 193
>Y12643-1|CAA73190.1| 486|Homo sapiens methyl-CpG binding protein 2
protein.
Length = 486
Score = 60.9 bits (141), Expect = 4e-09
Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRY---LGD-SVDLSCF 66
D LP+GW R+ RK+G SAGK DVY +P GK FRSK EL+ Y +GD S+D + F
Sbjct: 96 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDF 155
Query: 67 DF 68
DF
Sbjct: 156 DF 157
>X99686-1|CAA68001.1| 486|Homo sapiens methyl-CpG-binding protein 2
protein.
Length = 486
Score = 60.9 bits (141), Expect = 4e-09
Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRY---LGD-SVDLSCF 66
D LP+GW R+ RK+G SAGK DVY +P GK FRSK EL+ Y +GD S+D + F
Sbjct: 96 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDF 155
Query: 67 DF 68
DF
Sbjct: 156 DF 157
>X94628-1|CAA64331.1| 477|Homo sapiens methyl-CpG-binding protein
protein.
Length = 477
Score = 60.9 bits (141), Expect = 4e-09
Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRY---LGD-SVDLSCF 66
D LP+GW R+ RK+G SAGK DVY +P GK FRSK EL+ Y +GD S+D + F
Sbjct: 87 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDF 146
Query: 67 DF 68
DF
Sbjct: 147 DF 148
>X89430-1|CAA61599.1| 476|Homo sapiens methyl CpG binding protein 2
protein.
Length = 476
Score = 60.9 bits (141), Expect = 4e-09
Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRY---LGD-SVDLSCF 66
D LP+GW R+ RK+G SAGK DVY +P GK FRSK EL+ Y +GD S+D + F
Sbjct: 86 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDF 145
Query: 67 DF 68
DF
Sbjct: 146 DF 147
>L37298-1|AAC32737.1| 486|Homo sapiens methyl-CpG-binding protein
protein.
Length = 486
Score = 60.9 bits (141), Expect = 4e-09
Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRY---LGD-SVDLSCF 66
D LP+GW R+ RK+G SAGK DVY +P GK FRSK EL+ Y +GD S+D + F
Sbjct: 96 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDF 155
Query: 67 DF 68
DF
Sbjct: 156 DF 157
>BX538060-1|CAD97991.1| 516|Homo sapiens hypothetical protein
protein.
Length = 516
Score = 60.9 bits (141), Expect = 4e-09
Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRY---LGD-SVDLSCF 66
D LP+GW R+ RK+G SAGK DVY +P GK FRSK EL+ Y +GD S+D + F
Sbjct: 126 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDF 185
Query: 67 DF 68
DF
Sbjct: 186 DF 187
>BC011612-1|AAH11612.1| 486|Homo sapiens methyl CpG binding protein
2 (Rett syndrome) protein.
Length = 486
Score = 60.9 bits (141), Expect = 4e-09
Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRY---LGD-SVDLSCF 66
D LP+GW R+ RK+G SAGK DVY +P GK FRSK EL+ Y +GD S+D + F
Sbjct: 96 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDF 155
Query: 67 DF 68
DF
Sbjct: 156 DF 157
>AY541280-1|AAS55455.1| 498|Homo sapiens methyl CpG binding protein
2 isoform B protein.
Length = 498
Score = 60.9 bits (141), Expect = 4e-09
Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRY---LGD-SVDLSCF 66
D LP+GW R+ RK+G SAGK DVY +P GK FRSK EL+ Y +GD S+D + F
Sbjct: 108 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDF 167
Query: 67 DF 68
DF
Sbjct: 168 DF 169
>AJ132917-1|CAB46446.1| 486|Homo sapiens Methyl-CpG-binding protein
2 protein.
Length = 486
Score = 60.9 bits (141), Expect = 4e-09
Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRY---LGD-SVDLSCF 66
D LP+GW R+ RK+G SAGK DVY +P GK FRSK EL+ Y +GD S+D + F
Sbjct: 96 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDF 155
Query: 67 DF 68
DF
Sbjct: 156 DF 157
>AF158180-1|AAF33023.1| 486|Homo sapiens methyl CpG binding protein
2 protein.
Length = 486
Score = 60.9 bits (141), Expect = 4e-09
Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRY---LGD-SVDLSCF 66
D LP+GW R+ RK+G SAGK DVY +P GK FRSK EL+ Y +GD S+D + F
Sbjct: 96 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDF 155
Query: 67 DF 68
DF
Sbjct: 156 DF 157
>AF030876-2|AAC08757.1| 486|Homo sapiens Methyl-CpG binding protein
2 protein.
Length = 486
Score = 60.9 bits (141), Expect = 4e-09
Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 11 DCSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRY---LGD-SVDLSCF 66
D LP+GW R+ RK+G SAGK DVY +P GK FRSK EL+ Y +GD S+D + F
Sbjct: 96 DDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDF 155
Query: 67 DF 68
DF
Sbjct: 156 DF 157
>CR450305-1|CAG29301.1| 574|Homo sapiens MBD4 protein.
Length = 574
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 10 SDC-SALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
++C ++P GW+R R G +AG+ DVY+ SP G KFRSK L YL
Sbjct: 80 TECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRSKSSLANYL 128
>BC011752-1|AAH11752.1| 574|Homo sapiens MBD4 protein protein.
Length = 574
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 10 SDC-SALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
++C ++P GW+R R G +AG+ DVY+ SP G KFRSK L YL
Sbjct: 80 TECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRSKSSLANYL 128
>AF532602-1|AAP97338.1| 540|Homo sapiens methyl-CpG binding domain
protein 4 variant protein.
Length = 540
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 10 SDC-SALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
++C ++P GW+R R G +AG+ DVY+ SP G KFRSK L YL
Sbjct: 80 TECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRSKSSLANYL 128
>AF494057-1|AAM00008.1| 580|Homo sapiens methyl-CpG binding domain
protein 4 protein.
Length = 580
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 10 SDC-SALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
++C ++P GW+R R G +AG+ DVY+ SP G KFRSK L YL
Sbjct: 80 TECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRSKSSLANYL 128
>AF120999-1|AAD50374.1| 580|Homo sapiens methyl-CpG binding protein
4 protein.
Length = 580
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 10 SDC-SALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
++C ++P GW+R R G +AG+ DVY+ SP G KFRSK L YL
Sbjct: 80 TECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRSKSSLANYL 128
>AF114784-1|AAD22195.1| 580|Homo sapiens methyl-CpG binding
endonuclease protein.
Length = 580
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 10 SDC-SALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
++C ++P GW+R R G +AG+ DVY+ SP G KFRSK L YL
Sbjct: 80 TECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRSKSSLANYL 128
>AF072250-1|AAC68879.1| 580|Homo sapiens methyl-CpG binding protein
MBD4 protein.
Length = 580
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 10 SDC-SALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
++C ++P GW+R R G +AG+ DVY+ SP G KFRSK L YL
Sbjct: 80 TECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRSKSSLANYL 128
>BC012576-1|AAH12576.1| 643|Homo sapiens BAZ2B protein protein.
Length = 643
Score = 42.7 bits (96), Expect = 0.001
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
L GWQRE +R G + +V YY+P GKK R PE+++YL
Sbjct: 455 LEYGWQRETRIRNFG-GRLQGEVAYYAPCGKKLRQYPEVIKYL 496
>AB032255-1|BAA89212.1| 1972|Homo sapiens bromodomain adjacent to
zinc finger domain 2B protein.
Length = 1972
Score = 42.7 bits (96), Expect = 0.001
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
L GWQRE +R G + +V YY+P GKK R PE+++YL
Sbjct: 553 LEYGWQRETRIRNFG-GRLQGEVAYYAPCGKKLRQYPEVIKYL 594
>AF000422-1|AAB60864.1| 407|Homo sapiens TTF-I interacting peptide
5 protein.
Length = 407
Score = 40.3 bits (90), Expect = 0.006
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSV 61
L GW+RE ++K G + + +YY P GK+ + PE+++YL +V
Sbjct: 198 LQHGWRREVRIKK-GSHRWQGETWYYGPCGKRMKQFPEVIKYLSRNV 243
>AB002312-1|BAA20773.2| 1899|Homo sapiens KIAA0314 protein protein.
Length = 1899
Score = 40.3 bits (90), Expect = 0.006
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSV 61
L GW+RE ++K G + + +YY P GK+ + PE+++YL +V
Sbjct: 550 LQHGWRREVRIKK-GSHRWQGETWYYGPCGKRMKQFPEVIKYLSRNV 595
>AB032254-1|BAA89211.1| 1878|Homo sapiens bromodomain adjacent to
zinc finger domain 2A protein.
Length = 1878
Score = 39.1 bits (87), Expect = 0.014
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
L GW+RE ++K G + + +YY P GK+ + PE+++YL
Sbjct: 529 LQHGWRREVRIKK-GSHRWQGETWYYGPCGKRMKQFPEVIKYL 570
>AK027612-1|BAB55231.1| 708|Homo sapiens protein ( Homo sapiens
cDNA FLJ14706 fis, clone NT2RP3000596, weakly similar to
TRICHOHYALIN. ).
Length = 708
Score = 38.3 bits (85), Expect = 0.025
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVR 55
L GWQRE +R G + +V YY+P GKK R PE+++
Sbjct: 80 LEYGWQRETRIRNFG-GRLQGEVAYYAPCGKKLRQYPEVIK 119
>AB040909-1|BAA96000.2| 2142|Homo sapiens KIAA1476 protein protein.
Length = 2142
Score = 38.3 bits (85), Expect = 0.025
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVR 55
L GWQRE +R G + +V YY+P GKK R PE+++
Sbjct: 757 LEYGWQRETRIRNFG-GRLQGEVAYYAPCGKKLRQYPEVIK 796
>BC115394-1|AAI15395.1| 1076|Homo sapiens glutamate receptor
interacting protein 1 protein.
Length = 1076
Score = 33.9 bits (74), Expect = 0.54
Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 7/193 (3%)
Query: 59 DSVDLSCFDFQQGQINTMLLCKAKKARAQFDYRGVRNDASLVPPIRQTASIFKQPVTVYK 118
DS D S D G T +D+R + SL P + + + Y+
Sbjct: 755 DSWDGSAIDTSYGTEGTSFQASGYNFNT-YDWRSPKQRGSLSPVTKPRSQTYPDVGLSYE 813
Query: 119 TQDSKVKTDLK---HGTQEKPKQLFWEKRLEGLTACDANGVIGTTSLPKYIK-SLGPYTS 174
D + + + ++ FW + LE L C +G++ + SL T
Sbjct: 814 DWDRSTASGFAGAADSAETEQEENFWSQALEDLETCGQSGILRELEEKADRRVSLRNMTL 873
Query: 175 DATTIQSLATALHVSSQPITGQIGSKQAIKDNPGVFLNPEQPLIAAVTITKEDVRRQEER 234
AT + +L+ + Q+G + + ++ P DV R+
Sbjct: 874 LATIMSGSTMSLNHEAPTPRSQLGRQASFQERSS--SRPHYSQTTRSNTLPSDVGRKSVT 931
Query: 235 VKRARQRLRQALS 247
+++ +Q +++ +S
Sbjct: 932 LRKMKQEIKEIMS 944
>BC115393-1|AAI15394.1| 1076|Homo sapiens glutamate receptor
interacting protein 1 protein.
Length = 1076
Score = 33.9 bits (74), Expect = 0.54
Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 7/193 (3%)
Query: 59 DSVDLSCFDFQQGQINTMLLCKAKKARAQFDYRGVRNDASLVPPIRQTASIFKQPVTVYK 118
DS D S D G T +D+R + SL P + + + Y+
Sbjct: 755 DSWDGSAIDTSYGTEGTSFQASGYNFNT-YDWRSPKQRGSLSPVTKPRSQTYPDVGLSYE 813
Query: 119 TQDSKVKTDLK---HGTQEKPKQLFWEKRLEGLTACDANGVIGTTSLPKYIK-SLGPYTS 174
D + + + ++ FW + LE L C +G++ + SL T
Sbjct: 814 DWDRSTASGFAGAADSAETEQEENFWSQALEDLETCGQSGILRELEEKADRRVSLRNMTL 873
Query: 175 DATTIQSLATALHVSSQPITGQIGSKQAIKDNPGVFLNPEQPLIAAVTITKEDVRRQEER 234
AT + +L+ + Q+G + + ++ P DV R+
Sbjct: 874 LATIMSGSTMSLNHEAPTPRSQLGRQASFQERSS--SRPHYSQTTRSNTLPSDVGRKSVT 931
Query: 235 VKRARQRLRQALS 247
+++ +Q +++ +S
Sbjct: 932 LRKMKQEIKEIMS 944
>BC069076-1|AAH69076.1| 226|Homo sapiens prophet of Pit1,
paired-like homeodomain transcription factor protein.
Length = 226
Score = 31.1 bits (67), Expect = 3.8
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 16 PKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
P W RE + R TGLS ++ V++ + K+ + + L++ L
Sbjct: 94 PDIWARESLARDTGLSEARIQVWFQNRRAKQRKQERSLLQPL 135
>AF076215-1|AAC77454.1| 226|Homo sapiens prophet of Pit1 protein.
Length = 226
Score = 31.1 bits (67), Expect = 3.8
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 16 PKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
P W RE + R TGLS ++ V++ + K+ + + L++ L
Sbjct: 94 PDIWARESLARDTGLSEARIQVWFQNRRAKQRKQERSLLQPL 135
>AF076214-1|AAC77453.1| 226|Homo sapiens prophet of Pit1 protein.
Length = 226
Score = 31.1 bits (67), Expect = 3.8
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 16 PKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
P W RE + R TGLS ++ V++ + K+ + + L++ L
Sbjct: 94 PDIWARESLARDTGLSEARIQVWFQNRRAKQRKQERSLLQPL 135
>AF041141-1|AAC27900.1| 226|Homo sapiens pituitary specific
homeodomain protein protein.
Length = 226
Score = 31.1 bits (67), Expect = 3.8
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 16 PKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
P W RE + R TGLS ++ V++ + K+ + + L++ L
Sbjct: 94 PDIWARESLARDTGLSEARIQVWFQNRRAKQRKQERSLLQPL 135
>U07374-1|AAB60643.2| 267|Homo sapiens cathepsin S protein.
Length = 267
Score = 29.9 bits (64), Expect = 8.8
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 129 KHGTQEKPKQLFWEKRLEGLTACDANGVIGTTSLPKYIKSLGPYTSDATTIQSLATALHV 188
K +E ++L WEK L+ + + +G S + LG TS+ + SL ++L V
Sbjct: 40 KEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSE--EVMSLTSSLRV 97
Query: 189 SSQ 191
SQ
Sbjct: 98 PSQ 100
>S93414-1|AAB22005.1| 331|Homo sapiens cathepsin S protein.
Length = 331
Score = 29.9 bits (64), Expect = 8.8
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 129 KHGTQEKPKQLFWEKRLEGLTACDANGVIGTTSLPKYIKSLGPYTSDATTIQSLATALHV 188
K +E ++L WEK L+ + + +G S + LG TS+ + SL ++L V
Sbjct: 40 KEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSE--EVMSLTSSLRV 97
Query: 189 SSQ 191
SQ
Sbjct: 98 PSQ 100
>M86553-1|AAA35655.1| 331|Homo sapiens cathepsin protein.
Length = 331
Score = 29.9 bits (64), Expect = 8.8
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 129 KHGTQEKPKQLFWEKRLEGLTACDANGVIGTTSLPKYIKSLGPYTSDATTIQSLATALHV 188
K +E ++L WEK L+ + + +G S + LG TS+ + SL ++L V
Sbjct: 40 KEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSE--EVMSLTSSLRV 97
Query: 189 SSQ 191
SQ
Sbjct: 98 PSQ 100
>BC092463-1|AAH92463.1| 524|Homo sapiens 1-acylglycerol-3-phosphate
O-acyltransferase 7 (lysophosphatidic acid acyltrans
protein.
Length = 524
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 16 PKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
P+ W+ +V+RK GLSAG VD P + S+ E R L
Sbjct: 324 PQLWELGKVLRKAGLSAGYVDA-GAEPGRSRMISQEEFARQL 364
>BC024892-1|AAH24892.2| 275|Homo sapiens AGPAT7 protein protein.
Length = 275
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 16 PKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
P+ W+ +V+RK GLSAG VD P + S+ E R L
Sbjct: 75 PQLWELGKVLRKAGLSAGYVDA-GAEPGRSRMISQEEFARQL 115
>AY734233-1|AAU34184.1| 524|Homo sapiens Plsc-domain containing
protein protein.
Length = 524
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 16 PKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
P+ W+ +V+RK GLSAG VD P + S+ E R L
Sbjct: 324 PQLWELGKVLRKAGLSAGYVDA-GAEPGRSRMISQEEFARQL 364
>AF529233-1|AAP97722.1| 351|Homo sapiens PCPD protein protein.
Length = 351
Score = 29.9 bits (64), Expect = 8.8
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 16 PKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
P+ W+ +V+RK GLSAG VD P + S+ E R L
Sbjct: 151 PQLWELGKVLRKAGLSAGYVDA-GAEPGRSRMISQEEFARQL 191
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.316 0.131 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,443,421
Number of Sequences: 224733
Number of extensions: 1385441
Number of successful extensions: 3682
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3589
Number of HSP's gapped (non-prelim): 65
length of query: 249
length of database: 73,234,838
effective HSP length: 88
effective length of query: 161
effective length of database: 53,458,334
effective search space: 8606791774
effective search space used: 8606791774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 64 (29.9 bits)
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