Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001425-TA|BGIBMGA001425-PA|IPR001739|Methyl-CpG binding
(249 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein... 42 4e-04
DQ010405-1|AAY32916.1| 210|Caenorhabditis elegans methyl-bindin... 33 0.15
AF003137-10|AAT48622.1| 210|Caenorhabditis elegans Hypothetical... 33 0.15
Z47068-7|CAE17809.1| 88|Caenorhabditis elegans Hypothetical pr... 31 1.0
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 29 2.4
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 2.4
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 2.4
Z81052-1|CAB02872.1| 1175|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF237467-1|AAF60326.1| 1175|Caenorhabditis elegans pyruvate carb... 29 4.1
Z81568-11|CAB04593.1| 681|Caenorhabditis elegans Hypothetical p... 28 5.5
D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein. 28 5.5
D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein. 28 5.5
AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical ... 28 5.5
AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical ... 28 5.5
AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin i... 28 5.5
AF077531-7|AAL27240.1| 418|Caenorhabditis elegans Gex interacti... 28 5.5
AF077531-6|AAC64616.2| 408|Caenorhabditis elegans Gex interacti... 28 5.5
AF475094-1|AAL84635.1| 533|Caenorhabditis elegans SRC-1 protein. 28 7.2
AF419171-1|AAN31394.1| 533|Caenorhabditis elegans protein tyros... 28 7.2
AC084161-5|AAK29735.4| 533|Caenorhabditis elegans Src oncogene ... 28 7.2
Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical pr... 27 9.5
>U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein 1
protein.
Length = 1376
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 15 LPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYL 57
L GW+R+ VR + K DV Y++P GKK + E+VRYL
Sbjct: 333 LQLGWRRQTCVRSIASAGVKGDVSYFAPCGKKLSTYSEVVRYL 375
>DQ010405-1|AAY32916.1| 210|Caenorhabditis elegans methyl-binding
protein-2 protein.
Length = 210
Score = 33.5 bits (73), Expect = 0.15
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 20/153 (13%)
Query: 112 QPVTVYKTQDSKVKTDLKHGTQEKPKQLFWEKRLEGLTAC---DANGVIGTTSLPKY--- 165
QP T + D +K + T+ +P Q W K L GL + IG +Y
Sbjct: 56 QPETKVQN-DELLKRRSRRKTEMRPFQAMWAKSLSGLQVSIPHEKPDRIGDVKKAEYSYE 114
Query: 166 ----IKSLGPYTSDATTIQSLATALHVSSQPIT-----GQIGSKQAIKDN-PGVFLNPEQ 215
I + P S T +++ T + + GQ +K + N G+ L+ +Q
Sbjct: 115 SIKKISLIKPGVSAFTPEEAMTTVIQQMNNGFMTNGTFGQAANKDKLDVNFIGLALH-DQ 173
Query: 216 PLIAAVTITK--EDVRRQEERVKRARQRLRQAL 246
PL + I E++ QE+RV AR+RL++ +
Sbjct: 174 PLCERIPIAHIVEEISSQEKRVLDARKRLQEVM 206
>AF003137-10|AAT48622.1| 210|Caenorhabditis elegans Hypothetical
protein C27A12.10 protein.
Length = 210
Score = 33.5 bits (73), Expect = 0.15
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 20/153 (13%)
Query: 112 QPVTVYKTQDSKVKTDLKHGTQEKPKQLFWEKRLEGLTAC---DANGVIGTTSLPKY--- 165
QP T + D +K + T+ +P Q W K L GL + IG +Y
Sbjct: 56 QPETKVQN-DELLKRRSRRKTEMRPFQAMWAKSLSGLQVSIPHEKPDRIGDVKKAEYSYE 114
Query: 166 ----IKSLGPYTSDATTIQSLATALHVSSQPIT-----GQIGSKQAIKDN-PGVFLNPEQ 215
I + P S T +++ T + + GQ +K + N G+ L+ +Q
Sbjct: 115 SIKKISLIKPGVSAFTPEEAMTTVIQQMNNGFMTNGTFGQAANKDKLDVNFIGLALH-DQ 173
Query: 216 PLIAAVTITK--EDVRRQEERVKRARQRLRQAL 246
PL + I E++ QE+RV AR+RL++ +
Sbjct: 174 PLCERIPIAHIVEEISSQEKRVLDARKRLQEVM 206
>Z47068-7|CAE17809.1| 88|Caenorhabditis elegans Hypothetical
protein F15G9.6 protein.
Length = 88
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 162 LPKYIKSLGPYTSDATTIQSLATALHVSSQPITGQIGSKQAIKD 205
L K +++L P S +TTI SLAT S P + K+ I++
Sbjct: 4 LTKLVRTLSPEISGSTTISSLATTTTSSVSPNCDYVTQKKYIRN 47
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 119 TQDSKVKTDLKHGTQEKPKQLFWEKRLEGLTACDANGVIGTTSLPKYIKSLGPYTSDATT 178
T+D+ ++D K EKPK+ +K+ E ++ I TS ++S GP S+
Sbjct: 9295 TEDTTKESDNKETVDEKPKKKVLKKKTE-----KSDSTISETSETSAVESAGPSESETQN 9349
Query: 179 IQSL 182
+ ++
Sbjct: 9350 VAAV 9353
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 119 TQDSKVKTDLKHGTQEKPKQLFWEKRLEGLTACDANGVIGTTSLPKYIKSLGPYTSDATT 178
T+D+ ++D K EKPK+ +K+ E ++ I TS ++S GP S+
Sbjct: 9315 TEDTTKESDNKETVDEKPKKKVLKKKTE-----KSDSTISETSETSAVESAGPSESETQN 9369
Query: 179 IQSL 182
+ ++
Sbjct: 9370 VAAV 9373
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 119 TQDSKVKTDLKHGTQEKPKQLFWEKRLEGLTACDANGVIGTTSLPKYIKSLGPYTSDATT 178
T+D+ ++D K EKPK+ +K+ E ++ I TS ++S GP S+
Sbjct: 9315 TEDTTKESDNKETVDEKPKKKVLKKKTE-----KSDSTISETSETSAVESAGPSESETQN 9369
Query: 179 IQSL 182
+ ++
Sbjct: 9370 VAAV 9373
>Z81052-1|CAB02872.1| 1175|Caenorhabditis elegans Hypothetical
protein D2023.2 protein.
Length = 1175
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 113 PVTVYKTQDSKVKTDLKHGTQE-KPKQLFWEKRLEGLTACDANGVIGTTSLPKYIKSLG 170
PV Y T D ++T LKH P F +R + AC G++ P + +G
Sbjct: 87 PVAAYLTIDQIIETALKHNIDAIHPGYGFLSERSDFAAACQNAGIVFIGPSPDVMARMG 145
>AF237467-1|AAF60326.1| 1175|Caenorhabditis elegans pyruvate
carboxylase protein.
Length = 1175
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 113 PVTVYKTQDSKVKTDLKHGTQE-KPKQLFWEKRLEGLTACDANGVIGTTSLPKYIKSLG 170
PV Y T D ++T LKH P F +R + AC G++ P + +G
Sbjct: 87 PVAAYLTIDQIIETALKHNIDAIHPGYGFLSERSDFAAACQNAGIVFIGPSPDVMARMG 145
>Z81568-11|CAB04593.1| 681|Caenorhabditis elegans Hypothetical
protein K08E3.6 protein.
Length = 681
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 78 LCKAKKARAQFDYRGVRNDASLVPPIRQTASIFKQPVTVYKTQDSKVKTDLKHG 131
L KA+K A FD V++ + + + K + VY+T++ ++K +K+G
Sbjct: 72 LAKARKKLAMFDI-DVKDTQKHLRALMEENKALKLDLNVYETREKQLKDAMKNG 124
>D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 221 VTITKEDVRRQEERVKRARQRLRQALSVA 249
+ + +ED+ R E+R+K A +L QA A
Sbjct: 64 IVLVEEDLERTEDRLKTATSKLEQATKAA 92
>D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 221 VTITKEDVRRQEERVKRARQRLRQALSVA 249
+ + +ED+ R E+R+K A +L QA A
Sbjct: 64 IVLVEEDLERTEDRLKTATSKLEQATKAA 92
>AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1e protein.
Length = 256
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 221 VTITKEDVRRQEERVKRARQRLRQALSVA 249
+ + +ED+ R E+R+K A +L QA A
Sbjct: 64 IVLVEEDLERTEDRLKTATSKLEQATKAA 92
>AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1c protein.
Length = 256
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 221 VTITKEDVRRQEERVKRARQRLRQALSVA 249
+ + +ED+ R E+R+K A +L QA A
Sbjct: 64 IVLVEEDLERTEDRLKTATSKLEQATKAA 92
>AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin
isoform IV protein.
Length = 256
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 221 VTITKEDVRRQEERVKRARQRLRQALSVA 249
+ + +ED+ R E+R+K A +L QA A
Sbjct: 64 IVLVEEDLERTEDRLKTATSKLEQATKAA 92
>AF077531-7|AAL27240.1| 418|Caenorhabditis elegans Gex interacting
protein protein10, isoform b protein.
Length = 418
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 73 INTMLLCKAKKARAQFDYRGVRNDASLVPPIRQTASI 109
++ M+L +A+ R + YR + D +P +R +SI
Sbjct: 139 MDNMMLGRARPIRGESPYRNLSLDTGFIPSVRSRSSI 175
>AF077531-6|AAC64616.2| 408|Caenorhabditis elegans Gex interacting
protein protein10, isoform a protein.
Length = 408
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 73 INTMLLCKAKKARAQFDYRGVRNDASLVPPIRQTASI 109
++ M+L +A+ R + YR + D +P +R +SI
Sbjct: 139 MDNMMLGRARPIRGESPYRNLSLDTGFIPSVRSRSSI 175
>AF475094-1|AAL84635.1| 533|Caenorhabditis elegans SRC-1 protein.
Length = 533
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 36 DVYYYSPTGKKFRSKPELVRYLGDSVDLSC 65
D Y+ T + FRS ELVRY D D C
Sbjct: 201 DQGYFITTRRTFRSLQELVRYYSDVPDGLC 230
>AF419171-1|AAN31394.1| 533|Caenorhabditis elegans protein tyrosine
kinase protein.
Length = 533
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 36 DVYYYSPTGKKFRSKPELVRYLGDSVDLSC 65
D Y+ T + FRS ELVRY D D C
Sbjct: 201 DQGYFITTRRTFRSLQELVRYYSDVPDGLC 230
>AC084161-5|AAK29735.4| 533|Caenorhabditis elegans Src oncogene
related protein 1 protein.
Length = 533
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 36 DVYYYSPTGKKFRSKPELVRYLGDSVDLSC 65
D Y+ T + FRS ELVRY D D C
Sbjct: 201 DQGYFITTRRTFRSLQELVRYYSDVPDGLC 230
>Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical
protein F59F3.1 protein.
Length = 1227
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 12 CSALPKGWQREEVVRKTGLSAGKVDVYYYSPTGKKFRSKPELVRYLGDSVDLSC 65
CS++ KG + V + + G ++ + K S+P + Y GD+V L+C
Sbjct: 539 CSSIRKGNRAITVNKLIKIGEGFEVRPHHEKSSKATESEPSKIIYEGDNVKLTC 592
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.131 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,814,044
Number of Sequences: 27539
Number of extensions: 236213
Number of successful extensions: 663
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 24
length of query: 249
length of database: 12,573,161
effective HSP length: 80
effective length of query: 169
effective length of database: 10,370,041
effective search space: 1752536929
effective search space used: 1752536929
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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