Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001424-TA|BGIBMGA001424-PA|undefined
(112 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 30 0.36
03_05_1070 + 30125131-30127029 28 1.5
12_02_0758 - 22858221-22858367,22859362-22859460,22859505-228595... 27 2.6
02_05_0599 - 30251708-30251815,30251864-30251984,30252068-302522... 27 2.6
01_01_0403 - 3051317-3052120 27 2.6
01_01_0881 - 6908939-6909190,6909298-6909351,6909588-6909734,690... 27 3.4
04_04_0432 + 25157722-25157950,25158045-25158659,25159298-251593... 26 5.9
03_05_0165 + 21435948-21436144,21436234-21436318,21436690-214367... 26 5.9
01_06_1747 + 39627938-39628441 26 5.9
03_02_0152 - 5951201-5951616,5952228-5952602,5955534-5955948 26 7.8
01_06_0961 + 33383183-33383446,33383568-33383891,33385972-333861... 26 7.8
01_03_0015 + 11669321-11670070 26 7.8
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 30.3 bits (65), Expect = 0.36
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 57 RRYRRPMPGAATCGHSAGSGTTRRATSRVIRTRALSRRAYETPLLLSLPTNSA 109
RR P P A S+ S + +TS + R RRAY ++LP++ A
Sbjct: 33 RRRHSPSPSLALTPSSSASASASASTSSRPKVRPSPRRAYAAAQWVALPSHPA 85
>03_05_1070 + 30125131-30127029
Length = 632
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 53 RAHPRRYRRPMPGAATCGHSAGSGTTR 79
R H RY++P P A HSA +G R
Sbjct: 499 RLHLHRYQQPRPAAMAARHSADAGGGR 525
>12_02_0758 -
22858221-22858367,22859362-22859460,22859505-22859557,
22859674-22859728,22860204-22860284,22860779-22861213
Length = 289
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 76 GTTRRATSRVIRTRALSRRAYETPLLLSLPTNSAI 110
G T + + +ALSR+ TP LL++ TNS+I
Sbjct: 94 GRTSLPCATISSPQALSRKETWTPYLLAVATNSSI 128
>02_05_0599 -
30251708-30251815,30251864-30251984,30252068-30252215,
30252303-30252480,30252587-30252625,30252704-30252799,
30252879-30253030,30253336-30253722,30253836-30253940,
30254083-30254098
Length = 449
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 35 PSFAALRAQHLEFDSFGARAHPRRYRRPMPGAATCGHSAGSGT 77
P F QH S G RR RP+ A G S+G+GT
Sbjct: 25 PPFQHREEQHSSHSSRGYGMEIRRSLRPLDLAKQRGRSSGNGT 67
>01_01_0403 - 3051317-3052120
Length = 267
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 53 RAHP-RRYRRPMPGAATCGHSAGSGTTRRATS 83
RA+P RR RP P + TCG G +R S
Sbjct: 17 RANPGRRSARPTPASITCGPRDNRGPLQRGRS 48
>01_01_0881 -
6908939-6909190,6909298-6909351,6909588-6909734,
6909836-6910042,6910664-6911098
Length = 364
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 61 RPMPGAATCGHSAGSGTTRRATSRVIR 87
RP A G AG+G TRR T +R
Sbjct: 33 RPQDVGAAAGAGAGAGATRRVTVTTLR 59
>04_04_0432 +
25157722-25157950,25158045-25158659,25159298-25159380,
25159906-25159979,25160101-25160151,25160295-25160371,
25160856-25161595
Length = 622
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 43 QHLEFDSFGARAHPRRYRRPMPGAATCGHSAGSG 76
QHL S GA A +++P +A G+ G G
Sbjct: 506 QHLHLGSGGAAATHNFFQQPASSSAVYGNGGGGG 539
>03_05_0165 +
21435948-21436144,21436234-21436318,21436690-21436768,
21436892-21437005,21437249-21437361,21437570-21437677,
21437760-21437879
Length = 271
Score = 26.2 bits (55), Expect = 5.9
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 49 SFGARAHPRRYRRPMPGAATCGHSAGSGTTRRATSRVIRTRALSRRAYET 98
S G A RR RRP A H + S ++ ++RV+RT A + A T
Sbjct: 11 STGGGAVQRRPRRPASAATITCHRSSSSSS---SARVVRTGAAAAPAAAT 57
>01_06_1747 + 39627938-39628441
Length = 167
Score = 26.2 bits (55), Expect = 5.9
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 10/44 (22%)
Query: 55 HPRRYRRPMPGAATCGHSAGSGTTRRATSRVIRTRA-LSRRAYE 97
HPR RR +PG G RRATSR+ R+ RRA+E
Sbjct: 25 HPRARRRRLPGG---------GMRRRATSRLPAPRSPAPRRAWE 59
>03_02_0152 - 5951201-5951616,5952228-5952602,5955534-5955948
Length = 401
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 49 SFGARAHPRRYRRPMPGAATCGHSAGSGTTRRA--TSRVIRTRAL 91
S GA A P R P G+ + G S G G T ++RT +L
Sbjct: 107 SGGAEAEPAAARLPASGSPSSGSSDGEGRRLEVNMTDTLMRTSSL 151
>01_06_0961 +
33383183-33383446,33383568-33383891,33385972-33386130,
33386213-33386288,33387324-33387495,33388618-33388699
Length = 358
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 58 RYRRPMPGAATCGHSAGSGTTRRATSRVIRTRALSR 93
R P PG G RAT V R RAL+R
Sbjct: 11 RGAHPSPGLRAVVRRRRVGAAERATGAVARVRALAR 46
>01_03_0015 + 11669321-11670070
Length = 249
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 70 GHSAGSGTTRRATSRVIRTRAL 91
GHS S TTRR R++R+ A+
Sbjct: 85 GHSGDSRTTRRRERRLLRSLAI 106
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.326 0.134 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,038
Number of Sequences: 37544
Number of extensions: 91604
Number of successful extensions: 476
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 467
Number of HSP's gapped (non-prelim): 12
length of query: 112
length of database: 14,793,348
effective HSP length: 73
effective length of query: 39
effective length of database: 12,052,636
effective search space: 470052804
effective search space used: 470052804
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)
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