GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001424-TA|BGIBMGA001424-PA|undefined
         (112 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.37 
SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.66 
SB_15617| Best HMM Match : Glycoprotein_G (HMM E-Value=4.8)            26   8.1  

>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 17/57 (29%), Positives = 25/57 (43%)

Query: 54  AHPRRYRRPMPGAATCGHSAGSGTTRRATSRVIRTRALSRRAYETPLLLSLPTNSAI 110
           A P  YR  +PG  +  H A   T     +  IR +AL R    +P  L L  ++ +
Sbjct: 908 ALPAHYRVHVPGQRSASHEAFDTTRPHENAETIRKQALQRMRTRSPSGLDLSYHTIV 964


>SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 57  RRYRRPMPGAATCGHSAGSGTTRRATSRVIRTRALSRRAYETP 99
           RRYRR    A  CGH +GS  +R+   R   +  L    +E P
Sbjct: 384 RRYRRRARLAVDCGHCSGSQESRQKKQRKSISGHLDGHFWEGP 426


>SB_15617| Best HMM Match : Glycoprotein_G (HMM E-Value=4.8)
          Length = 554

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 36 SFAALRAQHLEFDSFGARAHPRRYRRPMPGAATCG 70
          +F +L+ ++ EF +F A   P  Y+R       CG
Sbjct: 42 NFQSLKNKNCEFQAFLATESPDIYKRTFEAVEQCG 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,010
Number of Sequences: 59808
Number of extensions: 89917
Number of successful extensions: 278
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 3
length of query: 112
length of database: 16,821,457
effective HSP length: 73
effective length of query: 39
effective length of database: 12,455,473
effective search space: 485763447
effective search space used: 485763447
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)