Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001424-TA|BGIBMGA001424-PA|undefined
(112 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC052965-1|AAH52965.1| 1475|Homo sapiens nucleoporin 153kDa prot... 30 1.8
AL157776-1|CAI16393.1| 1475|Homo sapiens nucleoporin 153kDa prot... 30 1.8
AL138824-2|CAI12246.1| 1475|Homo sapiens nucleoporin 153kDa prot... 30 1.8
AL138724-1|CAI40945.1| 1475|Homo sapiens nucleoporin 153kDa prot... 30 1.8
AB210024-1|BAE06106.1| 1455|Homo sapiens NUP153 variant protein ... 30 1.8
AK125166-1|BAC86069.1| 201|Homo sapiens protein ( Homo sapiens ... 28 5.5
BC131824-1|AAI31825.1| 523|Homo sapiens tweety homolog 3 (Droso... 28 7.3
BC014159-1|AAH14159.1| 231|Homo sapiens PLEKHH1 protein protein. 28 7.3
AL034419-5|CAI42202.1| 196|Homo sapiens chromosome 20 open read... 28 7.3
AK124608-1|BAC85898.1| 352|Homo sapiens protein ( Homo sapiens ... 28 7.3
AK074158-1|BAB84984.1| 354|Homo sapiens FLJ00231 protein protein. 28 7.3
AB162931-1|BAD20190.1| 523|Homo sapiens hTTY3 protein. 28 7.3
AB051478-1|BAB21782.2| 558|Homo sapiens KIAA1691 protein protein. 28 7.3
AB033026-1|BAA86514.1| 1403|Homo sapiens KIAA1200 protein protein. 28 7.3
BC043528-1|AAH43528.1| 152|Homo sapiens GLT1D1 protein protein. 27 9.6
AL360169-1|CAI16559.1| 1543|Homo sapiens RP3-442A17.1 protein. 27 9.6
AL353800-1|CAI20993.1| 1543|Homo sapiens RP3-442A17.1 protein. 27 9.6
AF219946-1|AAF87975.1| 1544|Homo sapiens tubby super-family prot... 27 9.6
AB040880-1|BAA95971.1| 1721|Homo sapiens KIAA1447 protein protein. 27 9.6
>BC052965-1|AAH52965.1| 1475|Homo sapiens nucleoporin 153kDa
protein.
Length = 1475
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 62 PMPGAATCGHSAGSGTTRRATSRVIRTRALSRRAYETPLL--LSLPTNSAIRP 112
P + G G G RR +R + ++ L E P+L +SLP S+ P
Sbjct: 433 PAANGLSSGVGGGGGKMRRERTRFVASKPLEEEEMEVPVLPKISLPITSSSLP 485
>AL157776-1|CAI16393.1| 1475|Homo sapiens nucleoporin 153kDa
protein.
Length = 1475
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 62 PMPGAATCGHSAGSGTTRRATSRVIRTRALSRRAYETPLL--LSLPTNSAIRP 112
P + G G G RR +R + ++ L E P+L +SLP S+ P
Sbjct: 433 PAANGLSSGVGGGGGKMRRERTRFVASKPLEEEEMEVPVLPKISLPITSSSLP 485
>AL138824-2|CAI12246.1| 1475|Homo sapiens nucleoporin 153kDa
protein.
Length = 1475
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 62 PMPGAATCGHSAGSGTTRRATSRVIRTRALSRRAYETPLL--LSLPTNSAIRP 112
P + G G G RR +R + ++ L E P+L +SLP S+ P
Sbjct: 433 PAANGLSSGVGGGGGKMRRERTRFVASKPLEEEEMEVPVLPKISLPITSSSLP 485
>AL138724-1|CAI40945.1| 1475|Homo sapiens nucleoporin 153kDa
protein.
Length = 1475
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 62 PMPGAATCGHSAGSGTTRRATSRVIRTRALSRRAYETPLL--LSLPTNSAIRP 112
P + G G G RR +R + ++ L E P+L +SLP S+ P
Sbjct: 433 PAANGLSSGVGGGGGKMRRERTRFVASKPLEEEEMEVPVLPKISLPITSSSLP 485
>AB210024-1|BAE06106.1| 1455|Homo sapiens NUP153 variant protein
protein.
Length = 1455
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 62 PMPGAATCGHSAGSGTTRRATSRVIRTRALSRRAYETPLL--LSLPTNSAIRP 112
P + G G G RR +R + ++ L E P+L +SLP S+ P
Sbjct: 455 PAANGLSSGVGGGGGKMRRERTRFVASKPLEEEEMEVPVLPKISLPITSSSLP 507
>AK125166-1|BAC86069.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ43176 fis, clone FCBBF3008944. ).
Length = 201
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 51 GARAHPRRYRRPMPGAATCGHSAGSGTTRRATSRVIRTRA 90
GAR P R PGAA G AG G RA +R +R RA
Sbjct: 64 GARERPAEGARE-PGAARRGARAGPGAHLRA-ARTLRARA 101
>BC131824-1|AAI31825.1| 523|Homo sapiens tweety homolog 3
(Drosophila) protein.
Length = 523
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 53 RAHPRRYRRPMPGAATCGHSAGSGTTRRATSRVI 86
+AH YR MP +CG S GS T+ A + +
Sbjct: 433 QAHDSLYRVHMPSLYSCGSSYGSETSIPAAAHTV 466
>BC014159-1|AAH14159.1| 231|Homo sapiens PLEKHH1 protein protein.
Length = 231
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 41 RAQHLEFDSFGARAHPRRYRRPMPGAATCGHSAGSGTTRRAT 82
+AQHL R HPRRYR P A H A TT+ AT
Sbjct: 30 KAQHL-LQQVLDRFHPRRYRHGAP-AEQLRHLADMLTTKWAT 69
>AL034419-5|CAI42202.1| 196|Homo sapiens chromosome 20 open reading
frame 100 protein.
Length = 196
Score = 27.9 bits (59), Expect = 7.3
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 56 PRRYRRPMPGAATCGHS-AGSGTT-RRATSRVIRTRALSRRAYETPLLLSLPTNSA 109
P R R P+P + TC S GT R SR RT +LS A P L+ PT A
Sbjct: 29 PSRVRTPVPLSVTCPKSWPPCGTAWERNRSRTSRT-SLSSPAARDPAHLAHPTPPA 83
>AK124608-1|BAC85898.1| 352|Homo sapiens protein ( Homo sapiens
cDNA FLJ42617 fis, clone BRACE3014807. ).
Length = 352
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 53 RAHPRRYRRPMPGAATCGHSAGSGTTRRATSRVI 86
+AH YR MP +CG S GS T+ A + +
Sbjct: 262 QAHDSLYRVHMPSLYSCGSSYGSETSIPAAAHTV 295
>AK074158-1|BAB84984.1| 354|Homo sapiens FLJ00231 protein protein.
Length = 354
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 53 RAHPRRYRRPMPGAATCGHSAGSGTTRRATSRVI 86
+AH YR MP +CG S GS T+ A + +
Sbjct: 264 QAHDSLYRVHMPSLYSCGSSYGSETSIPAAAHTV 297
>AB162931-1|BAD20190.1| 523|Homo sapiens hTTY3 protein.
Length = 523
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 53 RAHPRRYRRPMPGAATCGHSAGSGTTRRATSRVI 86
+AH YR MP +CG S GS T+ A + +
Sbjct: 433 QAHDSLYRVHMPSLYSCGSSYGSETSIPAAAHTV 466
>AB051478-1|BAB21782.2| 558|Homo sapiens KIAA1691 protein protein.
Length = 558
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 53 RAHPRRYRRPMPGAATCGHSAGSGTTRRATSRVI 86
+AH YR MP +CG S GS T+ A + +
Sbjct: 468 QAHDSLYRVHMPSLYSCGSSYGSETSIPAAAHTV 501
>AB033026-1|BAA86514.1| 1403|Homo sapiens KIAA1200 protein protein.
Length = 1403
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 41 RAQHLEFDSFGARAHPRRYRRPMPGAATCGHSAGSGTTRRAT 82
+AQHL R HPRRYR P A H A TT+ AT
Sbjct: 1202 KAQHL-LQQVLDRFHPRRYRHGAP-AEQLRHLADMLTTKWAT 1241
>BC043528-1|AAH43528.1| 152|Homo sapiens GLT1D1 protein protein.
Length = 152
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 76 GTTRRATSRVIRTRALSR----RAYETPLLLSLPTNSAIR 111
G SR++R R++SR + ++TPLL +P +A+R
Sbjct: 101 GRVLEEASRMLRVRSMSRVKELQQHQTPLLTGIPFFNALR 140
>AL360169-1|CAI16559.1| 1543|Homo sapiens RP3-442A17.1 protein.
Length = 1543
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 61 RPMPGAATCGHSAGSGTTRRATSRVIRTRALSRRAYETPLLLSLPTNSA 109
RP P TC +G+G + + + + T + S A ++ L P +SA
Sbjct: 1029 RPPPALYTCSQCSGTGPSSQPGASLAHTASASPLASQSSYSLLSPPDSA 1077
>AL353800-1|CAI20993.1| 1543|Homo sapiens RP3-442A17.1 protein.
Length = 1543
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 61 RPMPGAATCGHSAGSGTTRRATSRVIRTRALSRRAYETPLLLSLPTNSA 109
RP P TC +G+G + + + + T + S A ++ L P +SA
Sbjct: 1029 RPPPALYTCSQCSGTGPSSQPGASLAHTASASPLASQSSYSLLSPPDSA 1077
>AF219946-1|AAF87975.1| 1544|Homo sapiens tubby super-family protein
protein.
Length = 1544
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 61 RPMPGAATCGHSAGSGTTRRATSRVIRTRALSRRAYETPLLLSLPTNSA 109
RP P TC +G+G + + + + T + S A ++ L P +SA
Sbjct: 1030 RPPPALYTCSQCSGTGPSSQPGASLAHTASASPLASQSSYSLLSPPDSA 1078
>AB040880-1|BAA95971.1| 1721|Homo sapiens KIAA1447 protein protein.
Length = 1721
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 34 HPSFAALRAQHLEFDSFGARAHPRRYRRPMPGAATCGHSAGSGTTRRATSRVIRTRALS 92
HP L AQ S G+ H R + A G AGSG + + S++ R ALS
Sbjct: 1651 HP-VPTLLAQPEALRSKGSGPHAHAQRCFLSRATVAGTGAGSGPSSSSKSKLKRKEALS 1708
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.326 0.134 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,950,400
Number of Sequences: 224733
Number of extensions: 392792
Number of successful extensions: 1263
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1255
Number of HSP's gapped (non-prelim): 20
length of query: 112
length of database: 73,234,838
effective HSP length: 80
effective length of query: 32
effective length of database: 55,256,198
effective search space: 1768198336
effective search space used: 1768198336
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)
- SilkBase 1999-2023 -