GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001424-TA|BGIBMGA001424-PA|undefined
         (112 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical p...    27   4.0  
Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical pr...    26   7.0  

>U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical
           protein F27C1.11 protein.
          Length = 1037

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 67  ATCGHSAGSGTTRRATSRVIRTRALSRRAYETPLLLSLPTNSAIRP 112
           AT G+S+G+   +R     I  R +SRR  E  +  S  T S   P
Sbjct: 171 ATSGNSSGNSIEKRQPLPSINNRYVSRRPQENGVSNSTTTTSPYVP 216


>Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical
           protein W08D2.7 protein.
          Length = 1026

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 58  RYRRPMPGAATCGHSAGSGTTRR 80
           ++R  M G AT G SAGS   RR
Sbjct: 328 KFRDAMSGLATAGDSAGSFNKRR 350


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,002,337
Number of Sequences: 27539
Number of extensions: 55865
Number of successful extensions: 176
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 2
length of query: 112
length of database: 12,573,161
effective HSP length: 72
effective length of query: 40
effective length of database: 10,590,353
effective search space: 423614120
effective search space used: 423614120
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 53 (25.4 bits)