GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001424-TA|BGIBMGA001424-PA|undefined
         (112 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19570.2 68416.m02482 expressed protein contains Pfam domain,...    28   1.6  
At3g19570.1 68416.m02481 expressed protein contains Pfam domain,...    28   1.6  
At4g08670.1 68417.m01428 protease inhibitor/seed storage/lipid t...    27   2.9  
At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical...    26   6.6  

>At3g19570.2 68416.m02482 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 52  ARAHPRRYRRPMPGAATCGHSAGSGTTRRATSRVIRTRALSRRAYETPLLLSLPTNSA 109
           A+  P RY  P P  +T   +  + +T  ++S  +  R  S + Y +P LLS  TNSA
Sbjct: 44  AKNVPSRYLSPSPSHSTTTTTTTATSTSTSSSSSVILR--SSKRYPSP-LLSRTTNSA 98


>At3g19570.1 68416.m02481 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 627

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 52  ARAHPRRYRRPMPGAATCGHSAGSGTTRRATSRVIRTRALSRRAYETPLLLSLPTNSA 109
           A+  P RY  P P  +T   +  + +T  ++S  +  R  S + Y +P LLS  TNSA
Sbjct: 44  AKNVPSRYLSPSPSHSTTTTTTTATSTSTSSSSSVILR--SSKRYPSP-LLSRTTNSA 98


>At4g08670.1 68417.m01428 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 208

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 64  PGAATCGHSAGSGTTRRATSRVIRTRALSRRAYETPLLLSLPTNSA 109
           PGA+    SAG+ TT  + ++   T A S  + ETP + +   +S+
Sbjct: 135 PGASPVSPSAGAPTTSPSAAKSPETSATSPSSDETPSMTAPSPSSS 180


>At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical to
           dynamin-like protein 6 (ADL6) [Arabidopsis thaliana]
           GI:6651399; contains Pfam profiles PF01031: Dynamin
           central region, PF00350: Dynamin family, PF02212:
           Dynamin GTPase effector domain, PF00169: PH domain
          Length = 914

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 50  FGARAHPRRYRRPMPGAATCGHSAGSGTTRRAT 82
           +G+  H RRY  P         S GSG+ RR T
Sbjct: 867 YGSGGHSRRYSDPAQNGDAA--SPGSGSNRRTT 897


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.326    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,184
Number of Sequences: 28952
Number of extensions: 53129
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 4
length of query: 112
length of database: 12,070,560
effective HSP length: 72
effective length of query: 40
effective length of database: 9,986,016
effective search space: 399440640
effective search space used: 399440640
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 53 (25.4 bits)